RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 TMEM248Q9NWD8 314 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 UNC13CQ8NB66 2214 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 MYO18BQ8IUG5 2567 aa13.06□□□□□ -0.32
PTCH1-218ENST00000548945 AREL1O15033 823 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 SPINT1O43278 529 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 MMEP08473 750 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 MMP8P22894 467 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 ACVRL1P37023 503 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 MLLT3P42568 568 aaPredicted RBP13.05□□□□□ -0.32
PTCH1-218ENST00000548945 ABL2P42684 1182 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 PTPN9P43378 593 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 RPIAP49247 311 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 YPEL5P62699 121 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 ATP11AP98196 1134 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 EIF2B5Q13144 721 aaKnown RBP13.05□□□□□ -0.32
PTCH1-218ENST00000548945 MYLK3Q32MK0 819 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 C2CD6Q53TS8 623 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 CT47A1Q5JQC4 288 aaPredicted RBP13.05□□□□□ -0.32
PTCH1-218ENST00000548945 NAA35Q5VZE5 725 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 STRADAQ7RTN6 431 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 ZNF843Q8N446 348 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 KCNE4Q8WWG9 221 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 CASKIN2Q8WXE0 1202 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 CPA5Q8WXQ8 436 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 NAT6Q93015 286 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 VOPP1Q96AW1 172 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 CENPTQ96BT3 561 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 IL12RB2Q99665 862 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 BOCQ9BWV1 1114 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 C1QTNF7Q9BXJ2 289 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 METTL5Q9NRN9 209 aaKnown RBP13.05□□□□□ -0.32
PTCH1-218ENST00000548945 SPASTQ9UBP0 616 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 DACH1Q9UI36 760 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 KLF15Q9UIH9 416 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 NOCTQ9UK39 431 aaKnown RBP13.05□□□□□ -0.32
PTCH1-218ENST00000548945 NEU3Q9UQ49 428 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 SSUH2Q9Y2M2 353 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 PCDHGA8Q9Y5G5 932 aa13.05□□□□□ -0.32
PTCH1-218ENST00000548945 BOD1L1Q8NFC6 3051 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 TLN1Q9Y490 2541 aaKnown RBP13.04□□□□□ -0.32
PTCH1-218ENST00000548945 MAST4O15021 2626 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 C2CD4BA6NLJ0 364 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 LMO7DNF2Z398 122 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 KRIT1O00522 736 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 RAMP2O60895 175 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 CYP1A1P04798 512 aaPredicted RBP13.04□□□□□ -0.32
PTCH1-218ENST00000548945 MYF5P13349 255 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 TGM2P21980 687 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 EEF1GP26641 437 aaKnown RBP13.04□□□□□ -0.32
PTCH1-218ENST00000548945 SDC4P31431 198 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 SUOXP51687 545 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 THOP1P52888 689 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 SKOR1P84550 965 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 CDR2Q01850 454 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 NR0B2Q15466 257 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 CDKN3Q16667 212 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 TPRG1LQ5T0D9 272 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 RWDD4Q6NW29 188 aaKnown RBP13.04□□□□□ -0.32
PTCH1-218ENST00000548945 GUSBP11Q6P575 273 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 PCSK4Q6UW60 755 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 RBM44Q6ZP01 1051 aaKnown RBP13.04□□□□□ -0.32
PTCH1-218ENST00000548945 CLEC17AQ6ZS10 378 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 EFL1Q7Z2Z2 1120 aaKnown RBP13.04□□□□□ -0.32
PTCH1-218ENST00000548945 RYBPQ8N488 228 aaPredicted RBP13.04□□□□□ -0.32
PTCH1-218ENST00000548945 EMC1Q8N766 993 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 LMX1AQ8TE12 382 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 RXFP2Q8WXD0 754 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 CENPIQ92674 756 aaPredicted RBP13.04□□□□□ -0.32
PTCH1-218ENST00000548945 NTAN1Q96AB6 310 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 TBC1D31Q96DN5 1066 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 CCDC97Q96F63 343 aaPredicted RBP13.04□□□□□ -0.32
PTCH1-218ENST00000548945 SLC46A1Q96NT5 459 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 CAAP1Q9H8G2 361 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 NDFIP2Q9NV92 336 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 DKK3Q9UBP4 350 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 APOBEC3BQ9UH17 382 aaKnown RBP13.04□□□□□ -0.32
PTCH1-218ENST00000548945 MFHAS1Q9Y4C4 1052 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 DAAM1Q9Y4D1 1078 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 ACTL7AQ9Y615 435 aa13.04□□□□□ -0.32
PTCH1-218ENST00000548945 LRP4O75096 1905 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 CPED1A4D0V7 1026 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 PES1O00541 588 aaKnown RBP13.03□□□□□ -0.32
PTCH1-218ENST00000548945 KDELR3O43731 214 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 LRIG2O94898 1065 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 UGT2B4P06133 528 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 PLEKP08567 350 aaPredicted RBP13.03□□□□□ -0.32
PTCH1-218ENST00000548945 PLA2G2AP14555 144 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 RBMS1P29558 406 aaKnown RBP13.03□□□□□ -0.32
PTCH1-218ENST00000548945 GSCP56915 257 aaPredicted RBP13.03□□□□□ -0.32
PTCH1-218ENST00000548945 CFHR1Q03591 330 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 RAD51Q06609 339 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 C15orf59Q2T9L4 293 aaPredicted RBP13.03□□□□□ -0.32
PTCH1-218ENST00000548945 DEFB133Q30KQ1 61 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 DPCR1Q3MIW9 517 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 CCDC14Q49A88 953 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 INO80DQ53TQ3 878 aaPredicted RBP13.03□□□□□ -0.32
PTCH1-218ENST00000548945 C6orf132Q5T0Z8 1188 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 GDPD4Q6W3E5 623 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 TRIM72Q6ZMU5 477 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 MACC1Q6ZN28 852 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms