RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 ADAM23O75077 832 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 AVILO75366 819 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 PENKP01210 267 aaPredicted RBP12.15□□□□□ -0.47
CLIP1-208ENST00000537004 CISD3P0C7P0 127 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 VAV1P15498 845 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 ELK3P41970 407 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 CCT5P48643 541 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 HCAR3P49019 387 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 TPI1P60174 286 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 GRAMD4Q6IC98 578 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 RFWD3Q6PCD5 774 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 PRR23BQ6ZRT6 265 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 ARHGEF18Q6ZSZ5 1173 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 C3orf62Q6ZUJ4 267 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 BEND5Q7L4P6 421 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 LONP2Q86WA8 852 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 DDI1Q8WTU0 396 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 CCT8L2Q96SF2 557 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 TKTL2Q9H0I9 626 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 RASSF4Q9H2L5 321 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 INTS9Q9NV88 658 aaKnown RBP12.15□□□□□ -0.47
CLIP1-208ENST00000537004 RABGEF1Q9UJ41 708 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 SMG5Q9UPR3 1016 aaKnown RBP12.15□□□□□ -0.47
CLIP1-208ENST00000537004 ZNF510Q9Y2H8 683 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 HBS1LQ9Y450 684 aaKnown RBP12.15□□□□□ -0.47
CLIP1-208ENST00000537004 TEX264Q9Y6I9 313 aa12.15□□□□□ -0.47
CLIP1-208ENST00000537004 TMEM120BA0PK00 339 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-208ENST00000537004 METTL18O95568 372 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 FAM107AO95990 144 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 ERCC2P18074 760 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 DGKGP49619 791 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 CBLBQ13191 982 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 PDK1Q15118 436 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 PRKD1Q15139 912 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-208ENST00000537004 CRY1Q16526 586 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 EGFLAMQ63HQ2 1017 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 ANO7Q6IWH7 933 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 IGDCC3Q8IVU1 814 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 SRRM1Q8IYB3 904 aaKnown RBP12.14□□□□□ -0.47
CLIP1-208ENST00000537004 ZNF513Q8N8E2 541 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-208ENST00000537004 NETO2Q8NC67 525 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 MAML1Q92585 1016 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 ACDQ96AP0 544 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 MYEOVQ96EZ4 313 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 TPSD1Q9BZJ3 242 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 ACSS3Q9H6R3 686 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 RSPH14Q9UHP6 348 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 SLC24A2Q9UI40 661 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 MMP17Q9ULZ9 603 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 INVSQ9Y283 1065 aa12.14□□□□□ -0.47
CLIP1-208ENST00000537004 FANCMQ8IYD8 2048 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 WASH3PC4AMC7 463 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 PPP1R12AO14974 1030 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-208ENST00000537004 STK10O94804 968 aaKnown RBP12.13□□□□□ -0.47
CLIP1-208ENST00000537004 MOCS2O96007 188 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-208ENST00000537004 IGLV3-27P01718 113 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 TSHRP16473 764 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 HOXA6P31267 233 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 SLC6A4P31645 630 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 TNFRSF4P43489 277 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 TBX4P57082 545 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 GEMIN4P57678 1058 aaKnown RBP12.13□□□□□ -0.47
CLIP1-208ENST00000537004 AP1B1Q10567 949 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 SIM2Q14190 667 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-208ENST00000537004 EFTUD2Q15029 972 aaKnown RBP eCLIP12.13□□□□□ -0.47
CLIP1-208ENST00000537004 GEN1Q17RS7 908 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 ANKRD20A2Q5SQ80 823 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 ADGRF1Q5T601 910 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 ANKRD20A1Q5TYW2 823 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 ANKRD20A3Q5VUR7 823 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 CAND1Q86VP6 1230 aaKnown RBP12.13□□□□□ -0.47
CLIP1-208ENST00000537004 FAM217AQ8IXS0 508 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 AGGF1Q8N302 714 aaeCLIP12.13□□□□□ -0.47
CLIP1-208ENST00000537004 FBF1Q8TES7 1133 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 RNF34Q969K3 372 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 FCRL2Q96LA5 508 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-208ENST00000537004 SPATA13Q96N96 652 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 FERMT1Q9BQL6 677 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 FAM107BQ9H098 131 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 OR12D3Q9UGF7 316 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 FETUBQ9UGM5 382 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 FBXO10Q9UK96 956 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 ACTL7BQ9Y614 415 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 RASA4BC9J798 803 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 RNF103O00237 685 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 RASA4O43374 803 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 IGLV3-25P01717 112 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 BRAFP15056 766 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 TPSB2P20231 275 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 DGKEP52429 567 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 MRPS21P82921 87 aaKnown RBP12.13□□□□□ -0.47
CLIP1-208ENST00000537004 TPSAB1Q15661 275 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 KLHL38Q2WGJ6 581 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 FAM133BQ5BKY9 247 aaKnown RBP12.13□□□□□ -0.47
CLIP1-208ENST00000537004 NADSYN1Q6IA69 706 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 WDR5BQ86VZ2 330 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 TP53INP2Q8IXH6 220 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 CCNYQ8ND76 341 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 MCUQ8NE86 351 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms