RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 ITIH1P19827 911 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 NOS2P35228 1153 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 IGFALSP35858 605 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 ARF5P84085 180 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 EIF3IQ13347 325 aaKnown RBP20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 LRRC73Q5JTD7 316 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 MANEAQ5SRI9 462 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 RETSATQ6NUM9 610 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 OLFML1Q6UWY5 402 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 LRRC31Q6UY01 552 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 C11orf57Q6ZUT1 292 aaPredicted RBP20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 ZFAND4Q86XD8 727 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 PCDH20Q8N6Y1 951 aaKnown RBP20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 CPEB1Q9BZB8 566 aaKnown RBP20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 CEP44Q9C0F1 390 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 STRADBQ9C0K7 418 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 ATP13A1Q9HD20 1204 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 MBNL1Q9NR56 388 aaKnown RBP20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 DOLKQ9UPQ8 538 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 PCDHGA4Q9Y5G9 962 aa20.65■□□□□ 0.9
SQSTM1-215ENST00000514093 AHCTF1Q8WYP5 2266 aa20.64■□□□□ 0.89
SQSTM1-215ENST00000514093 AFPP02771 609 aaKnown RBP20.64■□□□□ 0.89
SQSTM1-215ENST00000514093 EIF4A3P38919 411 aaKnown RBP20.64■□□□□ 0.89
SQSTM1-215ENST00000514093 CXCR3P49682 368 aa20.64■□□□□ 0.89
SQSTM1-215ENST00000514093 RNASE9P60153 205 aaKnown RBP20.64■□□□□ 0.89
SQSTM1-215ENST00000514093 SLC6A3Q01959 620 aa20.64■□□□□ 0.89
SQSTM1-215ENST00000514093 PPARDQ03181 441 aa20.64■□□□□ 0.89
SQSTM1-215ENST00000514093 TLE1Q04724 770 aa20.64■□□□□ 0.89
SQSTM1-215ENST00000514093 KLHL10Q6JEL2 608 aa20.64■□□□□ 0.89
SQSTM1-215ENST00000514093 ARL10Q8N8L6 244 aa20.64■□□□□ 0.89
SQSTM1-215ENST00000514093 C1orf131Q8NDD1 294 aaKnown RBP20.64■□□□□ 0.89
SQSTM1-215ENST00000514093 DENND6BQ8NEG7 585 aa20.64■□□□□ 0.89
SQSTM1-215ENST00000514093 PCDH19Q8TAB3 1148 aa20.64■□□□□ 0.89
SQSTM1-215ENST00000514093 ASB12Q8WXK4 309 aa20.64■□□□□ 0.89
SQSTM1-215ENST00000514093 ANKMY1Q9P2S6 941 aa20.64■□□□□ 0.89
SQSTM1-215ENST00000514093 ACSL6Q9UKU0 697 aa20.64■□□□□ 0.89
SQSTM1-215ENST00000514093 LOXL2Q9Y4K0 774 aa20.64■□□□□ 0.89
SQSTM1-215ENST00000514093 TLN1Q9Y490 2541 aaKnown RBP20.63■□□□□ 0.89
SQSTM1-215ENST00000514093 PRAMEF33A0A0G2JMD5 474 aa20.63■□□□□ 0.89
SQSTM1-215ENST00000514093 BECN2A8MW95 431 aa20.63■□□□□ 0.89
SQSTM1-215ENST00000514093 PSMA7O14818 248 aa20.63■□□□□ 0.89
SQSTM1-215ENST00000514093 PRAMEF10O60809 474 aa20.63■□□□□ 0.89
SQSTM1-215ENST00000514093 MMP20O60882 483 aa20.63■□□□□ 0.89
SQSTM1-215ENST00000514093 CD160O95971 181 aa20.63■□□□□ 0.89
SQSTM1-215ENST00000514093 SFTPCP11686 197 aa20.63■□□□□ 0.89
SQSTM1-215ENST00000514093 SULT1E1P49888 294 aa20.63■□□□□ 0.89
SQSTM1-215ENST00000514093 CLCA4Q14CN2 919 aa20.63■□□□□ 0.89
SQSTM1-215ENST00000514093 ARHGAP44Q17R89 818 aa20.63■□□□□ 0.89
SQSTM1-215ENST00000514093 ARTNQ5T4W7 220 aa20.63■□□□□ 0.89
SQSTM1-215ENST00000514093 NYAP1Q6ZVC0 841 aa20.63■□□□□ 0.89
SQSTM1-215ENST00000514093 SMARCE1Q969G3 411 aa20.63■□□□□ 0.89
SQSTM1-215ENST00000514093 NPY6RQ99463 290 aa20.63■□□□□ 0.89
SQSTM1-215ENST00000514093 SEMA3CQ99985 751 aa20.63■□□□□ 0.89
SQSTM1-215ENST00000514093 FAM170AA1A519 330 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 ILVBLA1L0T0 632 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 TMX2-CTNND1H3BSU7 103 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 NVLO15381 856 aaKnown RBP20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 ITIH2P19823 946 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 ETV5P41161 510 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 SLC20A2Q08357 652 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 ZNF805Q5CZA5 627 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 BRMS1LQ5PSV4 323 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 MACC1Q6ZN28 852 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 SLC26A9Q7LBE3 791 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 ZSCAN30Q86W11 494 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 PTRH1Q86Y79 214 aaKnown RBP20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 HID1Q8IV36 788 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 Q8N9G6 341 aaPredicted RBP20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 HTR3CQ8WXA8 447 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 TSACCQ96A04 125 aaPredicted RBP20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 RAB7BQ96AH8 199 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 DHTKD1Q96HY7 919 aaPredicted RBP20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 TBATAQ96M53 351 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 SCAND2PQ9GZW5 306 aaPredicted RBP20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 LRRN3Q9H3W5 708 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 FOXJ2Q9P0K8 574 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 SEPT10Q9P0V9 454 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 ZNF212Q9UDV6 495 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 FLNCQ14315 2725 aa20.62■□□□□ 0.89
SQSTM1-215ENST00000514093 KRIT1O00522 736 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 PPFIA2O75334 1257 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 SMC2O95347 1197 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 UGT2B4P06133 528 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 MAPK10P53779 464 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 YPEL5P62699 121 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 APBA1Q02410 837 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 GNA12Q03113 381 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 DEUP1Q05D60 604 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 STIM1Q13586 685 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 PTPN20Q4JDL3 420 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 TTI2Q6NXR4 508 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 RD3Q7Z3Z2 195 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 TRIM59Q8IWR1 403 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 DRC7Q8IY82 874 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 FMR1NBQ8N0W7 255 aaPredicted RBP20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 SPATA20Q8TB22 786 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 SCG3Q8WXD2 468 aaKnown RBP20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 USP7Q93009 1102 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 VOPP1Q96AW1 172 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 C1orf74Q96LT6 269 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms