RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 ZNF783Q6ZMS7 281 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 CCDC121Q6ZUS5 278 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 DSG4Q86SJ6 1040 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 C14orf80Q86SX3 495 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 FAM124AQ86V42 546 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 MMAAQ8IVH4 418 aaKnown RBP8.2□□□□□ -1.1
SCN1A-207ENST00000507401 ZNF683Q8IZ20 524 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 ZCCHC9Q8N567 271 aaKnown RBP8.2□□□□□ -1.1
SCN1A-207ENST00000507401 DEFB124Q8NES8 71 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 CFAP61Q8NHU2 1237 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 AENQ8WTP8 325 aaKnown RBP8.2□□□□□ -1.1
SCN1A-207ENST00000507401 FRS2Q8WU20 508 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 CPA5Q8WXQ8 436 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 FAM131CQ96AQ9 280 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 RPL10LQ96L21 214 aaKnown RBP8.2□□□□□ -1.1
SCN1A-207ENST00000507401 CNTNAP3BQ96NU0 1288 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 ERGIC2Q96RQ1 377 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 TBCBQ99426 244 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 OMDQ99983 421 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 C2orf49Q9BVC5 232 aaPredicted RBP8.2□□□□□ -1.1
SCN1A-207ENST00000507401 CNTNAP3Q9BZ76 1288 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 SIK2Q9H0K1 926 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 MIR1-1HGQ9H1L0 117 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 NEUROG2Q9H2A3 272 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 MTG2Q9H4K7 406 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 FAM207AQ9NSI2 230 aaPredicted RBP8.2□□□□□ -1.1
SCN1A-207ENST00000507401 PPARGC1AQ9UBK2 798 aaKnown RBP8.2□□□□□ -1.1
SCN1A-207ENST00000507401 PPM1HQ9ULR3 514 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 WASF3Q9UPY6 502 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 HS3ST2Q9Y278 367 aa8.2□□□□□ -1.1
SCN1A-207ENST00000507401 CHD8Q9HCK8 2581 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 A0A1W2PPC4 97 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 ILVBLA1L0T0 632 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 FAM221BA6H8Z2 402 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 CFAP73A6NFT4 308 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 I6L893 689 aaPredicted RBP8.19□□□□□ -1.1
SCN1A-207ENST00000507401 MID1O15344 667 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 RNASEH2AO75792 299 aaKnown RBP8.19□□□□□ -1.1
SCN1A-207ENST00000507401 CER1O95813 267 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 FAM107AO95990 144 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 IL1BP01584 269 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 IGHV4-34P06331 123 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 RHOXF2BP0C7M4 288 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 TFE3P19532 575 aaPredicted RBP8.19□□□□□ -1.1
SCN1A-207ENST00000507401 ADRA1BP35368 520 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 CYLC1P35663 651 aaPredicted RBP8.19□□□□□ -1.1
SCN1A-207ENST00000507401 NUDT1P36639 197 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 FLT3P36888 993 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 PTPN9P43378 593 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 GRIA4P48058 902 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 KLK7P49862 253 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 VAV2P52735 878 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 NAP1L1P55209 391 aaKnown RBP8.19□□□□□ -1.1
SCN1A-207ENST00000507401 GNGT1P63211 74 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 RACK1P63244 317 aaKnown RBP8.19□□□□□ -1.1
SCN1A-207ENST00000507401 FMO1Q01740 532 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 NRG1Q02297 640 aaPredicted RBP8.19□□□□□ -1.1
SCN1A-207ENST00000507401 UBXN1Q04323 297 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 ZNF252P-AS1Q0IIN9 211 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 CCDC15Q0P6D6 951 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 GRIK2Q13002 908 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 SUZ12Q15022 739 aaKnown RBP8.19□□□□□ -1.1
SCN1A-207ENST00000507401 DLG2Q15700 870 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 HLA-BQ31612 363 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 ARL13BQ3SXY8 428 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 LACTB2Q53H82 288 aaPredicted RBP8.19□□□□□ -1.1
SCN1A-207ENST00000507401 NAA35Q5VZE5 725 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 KIAA0895LQ68EN5 471 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 LRIG3Q6UXM1 1119 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 STRADAQ7RTN6 431 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 APTXQ7Z2E3 356 aaKnown RBP8.19□□□□□ -1.1
SCN1A-207ENST00000507401 CACUL1Q86Y37 369 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 PHF13Q86YI8 300 aaPredicted RBP8.19□□□□□ -1.1
SCN1A-207ENST00000507401 STK40Q8N2I9 435 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 SLC35F6Q8N357 371 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 SH2D3CQ8N5H7 860 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 OR2T34Q8NGX1 318 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 GANCQ8TET4 914 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 SLC20A1Q8WUM9 679 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 NANOS1Q8WY41 292 aaKnown RBP8.19□□□□□ -1.1
SCN1A-207ENST00000507401 OR8D1Q8WZ84 308 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 CENPIQ92674 756 aaPredicted RBP8.19□□□□□ -1.1
SCN1A-207ENST00000507401 ITFG2Q969R8 447 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 SKA1Q96BD8 255 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 OSBPL9Q96SU4 736 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 PAIP2Q9BPZ3 127 aaKnown RBP8.19□□□□□ -1.1
SCN1A-207ENST00000507401 RHOXF2Q9BQY4 288 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 ORAI3Q9BRQ5 295 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 SELENOOQ9BVL4 669 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 OSBPL2Q9H1P3 480 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 TM9SF3Q9HD45 589 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 NLRC4Q9NPP4 1024 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 FSCN3Q9NQT6 498 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 ANLNQ9NQW6 1124 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 CPSF2Q9P2I0 782 aaKnown RBP8.19□□□□□ -1.1
SCN1A-207ENST00000507401 SLC25A13Q9UJS0 675 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 VPS28Q9UK41 221 aa8.19□□□□□ -1.1
SCN1A-207ENST00000507401 CEP295Q9C0D2 2601 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 NUMA1Q14980 2115 aa8.18□□□□□ -1.1
SCN1A-207ENST00000507401 A0A1W2PP55 124 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms