RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 RECQLP46063 649 aaPredicted RBP10.19□□□□□ -0.78
NUP54-203ENST00000504173 ATP5OP48047 213 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 RHOAP61586 193 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 PPIDQ08752 370 aaKnown RBP10.19□□□□□ -0.78
NUP54-203ENST00000504173 AP1B1Q10567 949 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 KLF1Q13351 362 aaPredicted RBP10.19□□□□□ -0.78
NUP54-203ENST00000504173 RFTN1Q14699 578 aaPredicted RBP10.19□□□□□ -0.78
NUP54-203ENST00000504173 LBRQ14739 615 aaKnown RBP10.19□□□□□ -0.78
NUP54-203ENST00000504173 LONRF2Q1L5Z9 754 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 INO80DQ53TQ3 878 aaPredicted RBP10.19□□□□□ -0.78
NUP54-203ENST00000504173 TMCO4Q5TGY1 634 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 TMEM92Q6UXU6 159 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 NYAP1Q6ZVC0 841 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 Q6ZVU0 165 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 WDR5BQ86VZ2 330 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 ZSCAN30Q86W11 494 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 BBS5Q8N3I7 341 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 PCDH20Q8N6Y1 951 aaKnown RBP10.19□□□□□ -0.78
NUP54-203ENST00000504173 TFB1MQ8WVM0 346 aaKnown RBP10.19□□□□□ -0.78
NUP54-203ENST00000504173 MAIP1Q8WWC4 291 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 ISG20Q96AZ6 181 aaKnown RBP10.19□□□□□ -0.78
NUP54-203ENST00000504173 TSGA13Q96PP4 275 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 UBL7Q96S82 380 aaPredicted RBP10.19□□□□□ -0.78
NUP54-203ENST00000504173 LGMNQ99538 433 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 FAM118BQ9BPY3 351 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 CINPQ9BW66 212 aaPredicted RBP10.19□□□□□ -0.78
NUP54-203ENST00000504173 CEP44Q9C0F1 390 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 BRD8Q9H0E9 1235 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 TNKS2Q9H2K2 1166 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 MTG2Q9H4K7 406 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 POLMQ9NP87 494 aaPredicted RBP10.19□□□□□ -0.78
NUP54-203ENST00000504173 POLR3BQ9NW08 1133 aaPredicted RBP10.19□□□□□ -0.78
NUP54-203ENST00000504173 SEPT3Q9UH03 358 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 SDK1Q7Z5N4 2213 aa10.19□□□□□ -0.78
NUP54-203ENST00000504173 ANKRD17O75179 2603 aaKnown RBP10.19□□□□□ -0.78
NUP54-203ENST00000504173 SHROOM3Q8TF72 1996 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 TCRBV21S2A2A0A5A6 115 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 TARSL2A2RTX5 802 aaKnown RBP10.18□□□□□ -0.78
NUP54-203ENST00000504173 HACD1B0YJ81 288 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 CES2O00748 559 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 MATN3O15232 486 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 ZBTB24O43167 697 aaPredicted RBP10.18□□□□□ -0.78
NUP54-203ENST00000504173 SIN3BO75182 1162 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 IGSF6O95976 241 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 DEKP35659 375 aaKnown RBP10.18□□□□□ -0.78
NUP54-203ENST00000504173 DGKEP52429 567 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 EIF3EP60228 445 aaKnown RBP10.18□□□□□ -0.78
NUP54-203ENST00000504173 SNRPD1P62314 119 aaKnown RBP10.18□□□□□ -0.78
NUP54-203ENST00000504173 ZNF33AQ06730 810 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 SLC10A7Q0GE19 358 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 XRCC4Q13426 336 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 CAMK2GQ13555 558 aaPredicted RBP10.18□□□□□ -0.78
NUP54-203ENST00000504173 ZNF235Q14590 738 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 PRKD1Q15139 912 aaPredicted RBP10.18□□□□□ -0.78
NUP54-203ENST00000504173 CYTH1Q15438 398 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 CRY1Q16526 586 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 SLC45A4Q5BKX6 768 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 MARC1Q5VT66 337 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 PAPD7Q5XG87 772 aaKnown RBP10.18□□□□□ -0.78
NUP54-203ENST00000504173 KIAA1211LQ6NV74 962 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 B4GALNT4Q76KP1 1039 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 CDKL3Q8IVW4 592 aaPredicted RBP10.18□□□□□ -0.78
NUP54-203ENST00000504173 RASGEF1CQ8N431 466 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 RYBPQ8N488 228 aaPredicted RBP10.18□□□□□ -0.78
NUP54-203ENST00000504173 TSTD1Q8NFU3 115 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 COG1Q8WTW3 980 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 FRS2Q8WU20 508 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 OR8D1Q8WZ84 308 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 MAML1Q92585 1016 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 PTPRN2Q92932 1015 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 MS4A14Q96JA4 679 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 CCDC114Q96M63 670 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 GDAP1L1Q96MZ0 367 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 QKIQ96PU8 341 aaKnown RBP eCLIP10.18□□□□□ -0.78
NUP54-203ENST00000504173 HHIPQ96QV1 700 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 NAP1L3Q99457 506 aaPredicted RBP10.18□□□□□ -0.78
NUP54-203ENST00000504173 FERMT1Q9BQL6 677 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 TM6SF2Q9BZW4 377 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 PRSS16Q9NQE7 514 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 HAUS2Q9NVX0 235 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 C2orf42Q9NWW7 574 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 SEPT10Q9P0V9 454 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 R3HDM2Q9Y2K5 976 aaKnown RBP10.18□□□□□ -0.78
NUP54-203ENST00000504173 FARP1Q9Y4F1 1045 aaPredicted RBP10.18□□□□□ -0.78
NUP54-203ENST00000504173 SAR1BQ9Y6B6 198 aa10.18□□□□□ -0.78
NUP54-203ENST00000504173 SPAG17Q6Q759 2223 aa10.17□□□□□ -0.78
NUP54-203ENST00000504173 A0A1W2PQF6 199 aa10.17□□□□□ -0.78
NUP54-203ENST00000504173 KIF2AO00139 706 aaPredicted RBP10.17□□□□□ -0.78
NUP54-203ENST00000504173 KCNK1O00180 336 aa10.17□□□□□ -0.78
NUP54-203ENST00000504173 PGRMC1O00264 195 aaKnown RBP10.17□□□□□ -0.78
NUP54-203ENST00000504173 ZNF185O15231 689 aa10.17□□□□□ -0.78
NUP54-203ENST00000504173 FANCGO15287 622 aa10.17□□□□□ -0.78
NUP54-203ENST00000504173 ALDH1A2O94788 518 aa10.17□□□□□ -0.78
NUP54-203ENST00000504173 APBB3O95704 486 aa10.17□□□□□ -0.78
NUP54-203ENST00000504173 PEX11BO96011 259 aa10.17□□□□□ -0.78
NUP54-203ENST00000504173 GSRP00390 522 aa10.17□□□□□ -0.78
NUP54-203ENST00000504173 PRB1P04280 392 aa10.17□□□□□ -0.78
NUP54-203ENST00000504173 RBP3P10745 1247 aa10.17□□□□□ -0.78
NUP54-203ENST00000504173 CCNB1P14635 433 aa10.17□□□□□ -0.78
NUP54-203ENST00000504173 PRLRP16471 622 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms