RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 PDCD2Q16342 344 aaPredicted RBP9.97□□□□□ -0.81
CLIP1-204ENST00000501271 PCSK7Q16549 785 aa9.97□□□□□ -0.81
CLIP1-204ENST00000501271 GSTA3Q16772 222 aa9.97□□□□□ -0.81
CLIP1-204ENST00000501271 SFT2D3Q587I9 215 aa9.97□□□□□ -0.81
CLIP1-204ENST00000501271 RBM20Q5T481 1227 aaKnown RBP9.97□□□□□ -0.81
CLIP1-204ENST00000501271 RNF220Q5VTB9 566 aa9.97□□□□□ -0.81
CLIP1-204ENST00000501271 RANBP10Q6VN20 620 aa9.97□□□□□ -0.81
CLIP1-204ENST00000501271 PDSS2Q86YH6 399 aa9.97□□□□□ -0.81
CLIP1-204ENST00000501271 SPATA2LQ8IUW3 424 aaPredicted RBP9.97□□□□□ -0.81
CLIP1-204ENST00000501271 CCDC117Q8IWD4 279 aaPredicted RBP9.97□□□□□ -0.81
CLIP1-204ENST00000501271 LZTR1Q8N653 840 aa9.97□□□□□ -0.81
CLIP1-204ENST00000501271 RTL3Q8N8U3 475 aaKnown RBP9.97□□□□□ -0.81
CLIP1-204ENST00000501271 TXNDC5Q8NBS9 432 aaKnown RBP9.97□□□□□ -0.81
CLIP1-204ENST00000501271 C2CD4AQ8NCU7 369 aaPredicted RBP9.97□□□□□ -0.81
CLIP1-204ENST00000501271 SGF29Q96ES7 293 aa9.97□□□□□ -0.81
CLIP1-204ENST00000501271 CATSPER2Q96P56 530 aa9.97□□□□□ -0.81
CLIP1-204ENST00000501271 PPP1R12CQ9BZL4 782 aa9.97□□□□□ -0.81
CLIP1-204ENST00000501271 EBF3Q9H4W6 596 aa9.97□□□□□ -0.81
CLIP1-204ENST00000501271 MRM3Q9HC36 420 aaKnown RBP9.97□□□□□ -0.81
CLIP1-204ENST00000501271 ENTPD7Q9NQZ7 604 aa9.97□□□□□ -0.81
CLIP1-204ENST00000501271 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.97□□□□□ -0.81
CLIP1-204ENST00000501271 A0A0U1RQF3 1178 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 A0A1W2PQH9 124 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 KCNU1A8MYU2 1149 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 B4GALT3O60512 393 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 KPNA6O60684 536 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 THRAP10827 490 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 HTR7P34969 479 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 PPARGP37231 505 aaPredicted RBP9.96□□□□□ -0.81
CLIP1-204ENST00000501271 CD151P48509 253 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 RAB27AP51159 221 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 HK2P52789 917 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 TSPY1Q01534 308 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 DSC3Q14574 896 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 ZNF789Q5FWF6 425 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 PIK3R6Q5UE93 754 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 KIAA0930Q6ICG6 404 aaPredicted RBP9.96□□□□□ -0.81
CLIP1-204ENST00000501271 TIGD7Q6NT04 549 aaPredicted RBP9.96□□□□□ -0.81
CLIP1-204ENST00000501271 ACAD11Q709F0 780 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 KBTBD6Q86V97 674 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 RASAL3Q86YV0 1011 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 CCNYL1Q8N7R7 359 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 PNPLA1Q8N8W4 532 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 PTCD2Q8WV60 388 aaKnown RBP9.96□□□□□ -0.81
CLIP1-204ENST00000501271 HEXDCQ8WVB3 486 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 NR1H4Q96RI1 486 aaPredicted RBP9.96□□□□□ -0.81
CLIP1-204ENST00000501271 ADAM2Q99965 735 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 DDX50Q9BQ39 737 aaKnown RBP9.96□□□□□ -0.81
CLIP1-204ENST00000501271 UBE2OQ9C0C9 1292 aaKnown RBP9.96□□□□□ -0.81
CLIP1-204ENST00000501271 MRPL46Q9H2W6 279 aaKnown RBP9.96□□□□□ -0.81
CLIP1-204ENST00000501271 NOL6Q9H6R4 1146 aaKnown RBP9.96□□□□□ -0.81
CLIP1-204ENST00000501271 FBXO5Q9UKT4 447 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 CDYLQ9Y232 598 aa9.96□□□□□ -0.81
CLIP1-204ENST00000501271 RGSL1A5PLK6 1076 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 NEMP2A6NFY4 417 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 PEX11BO96011 259 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 LYNP07948 512 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 CYBAP13498 195 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 DNAJB1P25685 340 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 AQP4P55087 323 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 WNT3AP56704 352 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 MSLNQ13421 630 aaPredicted RBP9.96□□□□□ -0.82
CLIP1-204ENST00000501271 HNRNPDQ14103 355 aaKnown RBP9.96□□□□□ -0.82
CLIP1-204ENST00000501271 LPIN1Q14693 890 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 MAPRE1Q15691 268 aaKnown RBP9.96□□□□□ -0.82
CLIP1-204ENST00000501271 SDHAF4Q5VUM1 108 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 FOXB2Q5VYV0 432 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 CNSTQ6PJW8 725 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 KDELC1Q6UW63 502 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 DSELQ8IZU8 1212 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 THEM5Q8N1Q8 247 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 CPSF7Q8N684 471 aaKnown RBP9.96□□□□□ -0.82
CLIP1-204ENST00000501271 KDM1BQ8NB78 822 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 GDPD5Q8WTR4 605 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 RCN3Q96D15 328 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 SUSD3Q96L08 255 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 NDNQ99608 321 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 POMKQ9H5K3 350 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 VTI1BQ9UEU0 232 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 IPO11Q9UI26 975 aaKnown RBP9.96□□□□□ -0.82
CLIP1-204ENST00000501271 ASB3Q9Y575 518 aa9.96□□□□□ -0.82
CLIP1-204ENST00000501271 FRMPD3Q5JV73 1810 aa9.95□□□□□ -0.82
CLIP1-204ENST00000501271 RNASEH1O60930 286 aaKnown RBP9.95□□□□□ -0.82
CLIP1-204ENST00000501271 ZCCHC18P0CG32 403 aa9.95□□□□□ -0.82
CLIP1-204ENST00000501271 CPB1P15086 417 aa9.95□□□□□ -0.82
CLIP1-204ENST00000501271 PAMP19021 973 aa9.95□□□□□ -0.82
CLIP1-204ENST00000501271 POLD2P49005 469 aa9.95□□□□□ -0.82
CLIP1-204ENST00000501271 THOP1P52888 689 aa9.95□□□□□ -0.82
CLIP1-204ENST00000501271 MAXP61244 160 aa9.95□□□□□ -0.82
CLIP1-204ENST00000501271 YWHAHQ04917 246 aaPredicted RBP9.95□□□□□ -0.82
CLIP1-204ENST00000501271 CYLC2Q14093 348 aaPredicted RBP9.95□□□□□ -0.82
CLIP1-204ENST00000501271 SLC39A12Q504Y0 691 aa9.95□□□□□ -0.82
CLIP1-204ENST00000501271 NXNQ6DKJ4 435 aa9.95□□□□□ -0.82
CLIP1-204ENST00000501271 TFAP2DQ7Z6R9 452 aa9.95□□□□□ -0.82
CLIP1-204ENST00000501271 SCN4BQ8IWT1 228 aa9.95□□□□□ -0.82
CLIP1-204ENST00000501271 KYQ8NBH2 561 aa9.95□□□□□ -0.82
CLIP1-204ENST00000501271 RP9Q8TA86 221 aaKnown RBP9.95□□□□□ -0.82
CLIP1-204ENST00000501271 TUBGCP5Q96RT8 1024 aa9.95□□□□□ -0.82
CLIP1-204ENST00000501271 OLFM1Q99784 485 aa9.95□□□□□ -0.82
CLIP1-204ENST00000501271 ZDHHC7Q9NXF8 308 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms