RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 NPWQ8N729 165 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 KIAA1524Q8TCG1 905 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 FAM131CQ96AQ9 280 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 ARRDC3Q96B67 414 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 LACRTQ9GZZ8 138 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 SEPT3Q9UH03 358 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 DMTF1Q9Y222 760 aa16.61■□□□□ 0.25
SF3A1-209ENST00000496189 C4orf47A7E2U8 309 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 PSTPIP1O43586 416 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 IGHV4-34P06331 123 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 TNNT1P13805 278 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 ADRB3P13945 408 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 HSPA9P38646 679 aaKnown RBP16.6■□□□□ 0.25
SF3A1-209ENST00000496189 CCZ1BP86790 482 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 CCZ1P86791 482 aaPredicted RBP16.6■□□□□ 0.25
SF3A1-209ENST00000496189 LBRQ14739 615 aaKnown RBP16.6■□□□□ 0.25
SF3A1-209ENST00000496189 ANKRD20A8PQ5CZ79 823 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 PIP5KL1Q5T9C9 394 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 MINDY1Q8N5J2 469 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 RNF10Q8N5U6 811 aaKnown RBP16.6■□□□□ 0.25
SF3A1-209ENST00000496189 FAM71BQ8TC56 605 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 TSC1Q92574 1164 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 FEM1CQ96JP0 617 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 SERAC1Q96JX3 654 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 PDLIM2Q96JY6 352 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 ATP13A3Q9H7F0 1226 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 PDFQ9HBH1 243 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 TM9SF3Q9HD45 589 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 RXFP3Q9NSD7 469 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 KLHL11Q9NVR0 708 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 MFHAS1Q9Y4C4 1052 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 DUSP10Q9Y6W6 482 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 CFAP54Q96N23 3096 aa16.6■□□□□ 0.25
SF3A1-209ENST00000496189 MACROD2A1Z1Q3 448 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 C16orf96A6NNT2 1141 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 MAGEC1O60732 1142 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 RNGTTO60942 597 aaKnown RBP16.59■□□□□ 0.25
SF3A1-209ENST00000496189 KRT1P04264 644 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 ZFXP17010 805 aaPredicted RBP16.59■□□□□ 0.25
SF3A1-209ENST00000496189 MX2P20592 715 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 KDELR1P24390 212 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 SERPINA4P29622 427 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 MAT2AP31153 395 aaKnown RBP16.59■□□□□ 0.25
SF3A1-209ENST00000496189 CSNK1EP49674 416 aaKnown RBP16.59■□□□□ 0.25
SF3A1-209ENST00000496189 MMRN1Q13201 1228 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 CYTH1Q15438 398 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 ATP13A4Q4VNC1 1196 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 KIAA1161Q6NSJ0 714 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 TIGD7Q6NT04 549 aaPredicted RBP16.59■□□□□ 0.25
SF3A1-209ENST00000496189 HORMAD1Q86X24 394 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 VSIG1Q86XK7 387 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 CPNE8Q86YQ8 564 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 UBE2Q2Q8WVN8 375 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 EXOC2Q96KP1 924 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 KLHL32Q96NJ5 620 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 TUBGCP5Q96RT8 1024 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 CPEB1Q9BZB8 566 aaKnown RBP16.59■□□□□ 0.25
SF3A1-209ENST00000496189 ETNK2Q9NVF9 386 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 LHX3Q9UBR4 397 aa16.59■□□□□ 0.25
SF3A1-209ENST00000496189 LATO43561 262 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 TSPAN6O43657 245 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 AP1G1O43747 822 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 CD48P09326 243 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 KCNA4P22459 653 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 NFKBIAP25963 317 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 CD38P28907 300 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 CSNK1DP48730 415 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 SUOXP51687 545 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 ARSEP51690 589 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 PPP2CBP62714 309 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 RPS21P63220 83 aaKnown RBP16.58■□□□□ 0.24
SF3A1-209ENST00000496189 PPP2CAP67775 309 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 NSUN2Q08J23 767 aaKnown RBP eCLIP16.58■□□□□ 0.24
SF3A1-209ENST00000496189 ELP6Q0PNE2 266 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 GRIK2Q13002 908 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 STAT4Q14765 748 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 MARC1Q5VT66 337 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 NAPEPLDQ6IQ20 393 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 PARS2Q7L3T8 475 aaKnown RBP16.58■□□□□ 0.24
SF3A1-209ENST00000496189 ERMP1Q7Z2K6 904 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 TTC7BQ86TV6 843 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 ZNF641Q96N77 438 aaPredicted RBP16.58■□□□□ 0.24
SF3A1-209ENST00000496189 SLC32A1Q9H598 525 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 SALL4Q9UJQ4 1053 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 HYOU1Q9Y4L1 999 aa16.58■□□□□ 0.24
SF3A1-209ENST00000496189 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.57■□□□□ 0.24
SF3A1-209ENST00000496189 A0A1B0GVT2 93 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 A0A1W2PQU0 124 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 ZNF487B1APH4 448 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 PRAMEF26H0Y7S4 382 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 DFNA5O60443 496 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 AKT2P31751 481 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 GKP32189 559 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 SCNN1BP51168 640 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 AP1S1P61966 158 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 BCL2L1Q07817 233 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 CCDC173Q0VFZ6 552 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 SGCGQ13326 291 aa16.57■□□□□ 0.24
SF3A1-209ENST00000496189 PAFAH1B3Q15102 231 aaKnown RBP16.57■□□□□ 0.24
SF3A1-209ENST00000496189 ERAP2Q6P179 960 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms