RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 ADA2Q9NZK5 511 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 ARHGAP26Q9UNA1 814 aa16.73■□□□□ 0.27
CCDC88B-210ENST00000494566 GPR182O15218 404 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 HNRNPRO43390 633 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 AHSGP02765 367 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 HNRNPLP14866 589 aaKnown RBP eCLIP16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 AIF1P55008 147 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 MAXP61244 160 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 NAB1Q13506 487 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 DDR2Q16832 855 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 LSM12Q3MHD2 195 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 PITRM1Q5JRX3 1037 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 FAM91A1Q658Y4 838 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 CYP2R1Q6VVX0 501 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 ZNF280BQ86YH2 543 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 IFNL1Q8IU54 200 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 SLC45A3Q96JT2 553 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 IL22Q9GZX6 179 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 NMRK2Q9NPI5 230 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 TRHDEQ9UKU6 1024 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 IRAK2O43187 625 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 PIK3R1P27986 724 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 DPP6P42658 865 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 RALGDSQ12967 914 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 LPIN1Q14693 890 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 SLC5A9Q2M3M2 681 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 SLC39A12Q504Y0 691 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 STXBP5Q5T5C0 1151 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 ACAD11Q709F0 780 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 SCD5Q86SK9 330 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 MFSD6LQ8IWD5 586 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 NAT14Q8WUY8 206 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 BRD8Q9H0E9 1235 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 ZDHHC2Q9UIJ5 367 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 Q9Y3F1 56 aa16.72■□□□□ 0.27
CCDC88B-210ENST00000494566 A0A1W2PQH9 124 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 CCL22O00626 93 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 DNAJA2O60884 412 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 SOAT2O75908 522 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 HLA-DQB2P05538 268 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 MAGEA12P43365 314 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 PRPSAP1Q14558 356 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 ARL13AQ5H913 290 aaPredicted RBP16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 DSELQ8IZU8 1212 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 LRGUKQ96M69 825 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 TBL1YQ9BQ87 522 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 PRDM16Q9HAZ2 1276 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 RHBDL2Q9NX52 303 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 MAFKO60675 156 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 GRK4P32298 578 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 RPL9P32969 192 aaKnown RBP16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 GRIA4P48058 902 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 INHBCP55103 352 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 KCNA10Q16322 511 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 GSTA3Q16772 222 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 INSCQ1MX18 579 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 NAPEPLDQ6IQ20 393 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 ZC3HC1Q86WB0 502 aaKnown RBP16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 SPATA2LQ8IUW3 424 aaPredicted RBP16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 CEP97Q8IW35 865 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 ACTRT2Q8TDY3 377 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 B3GALT6Q96L58 329 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 PKMYT1Q99640 499 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 CDH19Q9H159 772 aa16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 RBM22Q9NW64 420 aaKnown RBP eCLIP16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 RUVBL2Q9Y230 463 aaKnown RBP16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 PRG3Q9Y2Y8 225 aaPredicted RBP16.71■□□□□ 0.27
CCDC88B-210ENST00000494566 NYNRINQ9P2P1 1898 aaKnown RBP16.71■□□□□ 0.26
CCDC88B-210ENST00000494566 SBK3P0C264 359 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 GRK2P25098 689 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 NPY2RP49146 381 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 CDKL1Q00532 357 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 CAP1Q01518 475 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 CCDC153Q494R4 210 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 GK5Q6ZS86 529 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 AMIGO2Q86SJ2 522 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 CLEC14AQ86T13 490 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 TTC9BQ8N6N2 239 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 FAM110BQ8TC76 370 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 KLHL5Q96PQ7 755 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 ACE2Q9BYF1 805 aaPredicted RBP16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 CHST12Q9NRB3 414 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 LZTS1Q9Y250 596 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 CCNT2O60583 730 aaKnown RBP16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 TBX18O95935 607 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 CYBAP13498 195 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 CCND3P30281 292 aaPredicted RBP16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 HARS2P49590 506 aaKnown RBP16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 LILRA2Q8N149 483 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 EZH1Q92800 747 aaPredicted RBP16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 PKP2Q99959 881 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 SLC39A3Q9BRY0 314 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 TRIM8Q9BZR9 551 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 GPAMQ9HCL2 828 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 GTSE1Q9NYZ3 720 aa16.7■□□□□ 0.26
CCDC88B-210ENST00000494566 ATP6AP2A0A1C7CYW4 349 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 MTSS1O43312 755 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 ATP6AP2O75787 350 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 ARNTP27540 789 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 FLT3LGP49771 235 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms