RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 TLK2Q86UE8 772 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 MICU3Q86XE3 530 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 MAPKAPK5Q8IW41 473 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 CCDC13Q8IYE1 715 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 KIAA2013Q8IYS2 634 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 DNAJC5GQ8N7S2 189 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 FRMD1Q8N878 549 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 RTL3Q8N8U3 475 aaKnown RBP4.27□□□□□ -1.73
VPS41-212ENST00000482217 FAM133AQ8N9E0 248 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 POGLUT1Q8NBL1 392 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 C7orf57Q8NEG2 295 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 FAM46DQ8NEK8 389 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 POC1BQ8TC44 478 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 CPT1CQ8TCG5 803 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 GANCQ8TET4 914 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 STAMQ92783 540 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 SPACA9Q96E40 222 aaPredicted RBP4.27□□□□□ -1.73
VPS41-212ENST00000482217 EPSTI1Q96J88 318 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 FAM111AQ96PZ2 611 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 TRAPPC9Q96Q05 1148 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 CTAGE1Q96RT6 745 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 TRIB1Q96RU8 372 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 LBHD1Q9BQE6 289 aaPredicted RBP4.27□□□□□ -1.73
VPS41-212ENST00000482217 PHF7Q9BWX1 381 aaPredicted RBP4.27□□□□□ -1.73
VPS41-212ENST00000482217 TEX12Q9BXU0 123 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 PUS3Q9BZE2 481 aaKnown RBP4.27□□□□□ -1.73
VPS41-212ENST00000482217 TMEM206Q9H813 350 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 MAGEE1Q9HCI5 957 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 SERHLQ9NQF3 203 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 NECTIN3Q9NQS3 549 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 PARPBPQ9NWS1 579 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 HCFC1R1Q9NWW0 138 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 ETAA1Q9NY74 926 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 DONSONQ9NYP3 566 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 MRPL15Q9P015 296 aaKnown RBP4.27□□□□□ -1.73
VPS41-212ENST00000482217 SH3BP4Q9P0V3 963 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 HSFX1Q9UBD0 423 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 XPR1Q9UBH6 696 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 KCNE5Q9UJ90 142 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 SSX2IPQ9Y2D8 614 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 TRPV2Q9Y5S1 764 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 LYVE1Q9Y5Y7 322 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.27□□□□□ -1.73
VPS41-212ENST00000482217 LRRD1A4D1F6 860 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 VWA3AA6NCI4 1184 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 ZSCAN5BA6NJL1 495 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 AHRRA9YTQ3 701 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 PSMD14O00487 310 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 CETN3O15182 167 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 POLR2DO15514 142 aaKnown RBP4.26□□□□□ -1.73
VPS41-212ENST00000482217 KLK10O43240 276 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 DNPH1O43598 174 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 GPRIN2O60269 458 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 ERLIN1O75477 346 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 PDE8BO95263 885 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 SMC2O95347 1197 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 DIRAS3O95661 229 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 PEX11BO96011 259 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 NCF1P14598 390 aaPredicted RBP4.26□□□□□ -1.73
VPS41-212ENST00000482217 PTPN3P26045 913 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 KLRC1P26715 233 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 GCLCP48506 637 aaPredicted RBP4.26□□□□□ -1.73
VPS41-212ENST00000482217 UCP3P55916 312 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 RPP30P78346 268 aaKnown RBP4.26□□□□□ -1.73
VPS41-212ENST00000482217 HSD11B2P80365 405 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 ZXDAP98168 799 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 FSTL1Q12841 308 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 LMAN2Q12907 356 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 NPRL3Q12980 569 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 BYSLQ13895 437 aaKnown RBP4.26□□□□□ -1.73
VPS41-212ENST00000482217 CAPSQ13938 189 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 MEP1BQ16820 701 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 HADHQ16836 314 aaKnown RBP4.26□□□□□ -1.73
VPS41-212ENST00000482217 FAM187BQ17R55 369 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 LEXMQ3ZCV2 418 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 MCMDC2Q4G0Z9 681 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 HSP90AA5PQ58FG0 334 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 TMTC4Q5T4D3 741 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 LRRC55Q6ZSA7 311 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 UNC13DQ70J99 1090 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 MTERF4Q7Z6M4 381 aaKnown RBP4.26□□□□□ -1.73
VPS41-212ENST00000482217 ADCK1Q86TW2 530 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 WDR49Q8IV35 697 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 C1orf210Q8IVY1 113 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 WDR63Q8IWG1 891 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 PALM2Q8IXS6 379 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 ULK2Q8IYT8 1036 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 MAML2Q8IZL2 1156 aaPredicted RBP4.26□□□□□ -1.73
VPS41-212ENST00000482217 KRT222Q8N1A0 295 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 TMEM132CQ8N3T6 1108 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 SLC15A4Q8N697 577 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 OR6Y1Q8NGX8 325 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 LILRB4Q8NHJ6 448 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 HASPINQ8TF76 798 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 ANKRD7Q92527 254 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 MRPS27Q92552 414 aaKnown RBP4.26□□□□□ -1.73
VPS41-212ENST00000482217 ZKSCAN4Q969J2 545 aaPredicted RBP4.26□□□□□ -1.73
VPS41-212ENST00000482217 FAM162AQ96A26 154 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 TMIGD2Q96BF3 282 aa4.26□□□□□ -1.73
VPS41-212ENST00000482217 MRPL38Q96DV4 380 aaKnown RBP4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms