RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 ACVRL1P37023 503 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 RPIAP49247 311 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 DNA2P51530 1060 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 ZNF143P52747 638 aaPredicted RBP13.74□□□□□ -0.21
CHD3-209ENST00000473376 POLR2FP61218 127 aaKnown RBP13.74□□□□□ -0.21
CHD3-209ENST00000473376 AGERQ15109 404 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 KRT31Q15323 416 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 PARP15Q460N3 678 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 C2CD6Q53TS8 623 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 RWDD4Q6NW29 188 aaKnown RBP13.74□□□□□ -0.21
CHD3-209ENST00000473376 LVRNQ6Q4G3 990 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 SLFN11Q7Z7L1 901 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 UMODL1-AS1Q8N2C9 162 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 RTL3Q8N8U3 475 aaKnown RBP13.74□□□□□ -0.21
CHD3-209ENST00000473376 ANKRD20A12PQ8NF67 263 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 GLMNQ92990 594 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 WBP1Q96G27 269 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 HIC2Q96JB3 615 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 GDAP1L1Q96MZ0 367 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 DCBLD2Q96PD2 775 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 ABCG4Q9H172 646 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 ZDHHC6Q9H6R6 413 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 CATSPERBQ9H7T0 1116 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 POLR1BQ9H9Y6 1135 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 FZD3Q9NPG1 666 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 NDFIP2Q9NV92 336 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 ADAM22Q9P0K1 906 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 SPASTQ9UBP0 616 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 IPO11Q9UI26 975 aaKnown RBP13.74□□□□□ -0.21
CHD3-209ENST00000473376 SIK3Q9Y2K2 1263 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 U3KQA8 63 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 LOC400499M0QZD8 3231 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 CHD5Q8TDI0 1954 aa13.74□□□□□ -0.21
CHD3-209ENST00000473376 TRPM6Q9BX84 2022 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 CFAP69A5D8W1 941 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 ANKRD62A6NC57 917 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 IGLON5A6NGN9 336 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 LMO7DNF2Z398 122 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 FAM72CH0Y354 149 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 NEMP1O14524 444 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 RAD51BO15315 384 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 FGF10O15520 208 aaPredicted RBP13.73□□□□□ -0.21
CHD3-209ENST00000473376 FFAR2O15552 330 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 AQP9O43315 295 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 DESP17661 470 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 GPD1P21695 349 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 RFC1P35251 1148 aaPredicted RBP13.73□□□□□ -0.21
CHD3-209ENST00000473376 BLKP51451 505 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 PCBP4P57723 403 aaKnown RBP13.73□□□□□ -0.21
CHD3-209ENST00000473376 TLE3Q04726 772 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 ELP6Q0PNE2 266 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 MAPK8IP2Q13387 824 aaPredicted RBP13.73□□□□□ -0.21
CHD3-209ENST00000473376 PDE1CQ14123 709 aaPredicted RBP13.73□□□□□ -0.21
CHD3-209ENST00000473376 CLEC16AQ2KHT3 1053 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 C15orf59Q2T9L4 293 aaPredicted RBP13.73□□□□□ -0.21
CHD3-209ENST00000473376 HSP90AA4PQ58FG1 418 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 FAM72AQ5TYM5 149 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 FAM72DQ6L9T8 149 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 GDPD4Q6W3E5 623 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 TTC7BQ86TV6 843 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 FAM72BQ86X60 149 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 GPT2Q8TD30 523 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 FAM172AQ8WUF8 416 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 SLC20A1Q8WUM9 679 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 SNRNP27Q8WVK2 155 aaKnown RBP13.73□□□□□ -0.21
CHD3-209ENST00000473376 NAT6Q93015 286 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 VCPIP1Q96JH7 1222 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 BBC3Q96PG8 261 aaPredicted RBP13.73□□□□□ -0.21
CHD3-209ENST00000473376 ERGIC2Q96RQ1 377 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 MYOCQ99972 504 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 C11orf70Q9BRQ4 267 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 SELENOOQ9BVL4 669 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 BOCQ9BWV1 1114 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 DPH1Q9BZG8 443 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 TM6SF2Q9BZW4 377 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 TAB2Q9NYJ8 693 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 DNAI1Q9UI46 699 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 SSUH2Q9Y2M2 353 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 PCDHGA8Q9Y5G5 932 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 ASXL3Q9C0F0 2248 aa13.73□□□□□ -0.21
CHD3-209ENST00000473376 TCRBV5S1A1TA0A578 114 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 TSPAN11A1L157 253 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 KRIT1O00522 736 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 TM7SF2O76062 418 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 IGSF6O95976 241 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 JUNDP17535 347 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 ITPKBP27987 946 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 EPHB2P29323 1055 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 ABL2P42684 1182 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 THOP1P52888 689 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 CLDN6P56747 220 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 SYCP1Q15431 976 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 CDO1Q16878 200 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 TMEM52BQ4KMG9 183 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 EFHC2Q5JST6 749 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 WDR59Q6PJI9 974 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 MACC1Q6ZN28 852 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 GPR155Q7Z3F1 870 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 FSTL5Q8N475 847 aaPredicted RBP13.72□□□□□ -0.21
CHD3-209ENST00000473376 JOSD2Q8TAC2 188 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms