RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	OXR1	Q8N573	874 aa		10.84	□□□□□ -0.67
UBR4-208	ENST00000459947	PLD5	Q8N7P1	536 aa		10.84	□□□□□ -0.67
UBR4-208	ENST00000459947	C12orf50	Q8NA57	414 aa	Predicted RBP	10.84	□□□□□ -0.67
UBR4-208	ENST00000459947	DENND6B	Q8NEG7	585 aa		10.84	□□□□□ -0.67
UBR4-208	ENST00000459947	TFB1M	Q8WVM0	346 aa	Known RBP	10.84	□□□□□ -0.67
UBR4-208	ENST00000459947	HES6	Q96HZ4	224 aa		10.84	□□□□□ -0.67
UBR4-208	ENST00000459947	NUSAP1	Q9BXS6	441 aa	Known RBP	10.84	□□□□□ -0.67
UBR4-208	ENST00000459947	CARD9	Q9H257	536 aa		10.84	□□□□□ -0.67
UBR4-208	ENST00000459947	SUV39H2	Q9H5I1	410 aa		10.84	□□□□□ -0.67
UBR4-208	ENST00000459947	KLHL11	Q9NVR0	708 aa		10.84	□□□□□ -0.67
UBR4-208	ENST00000459947	DTL	Q9NZJ0	730 aa		10.84	□□□□□ -0.67
UBR4-208	ENST00000459947	ZKSCAN5	Q9Y2L8	839 aa		10.84	□□□□□ -0.67
UBR4-208	ENST00000459947		A0A1W2PP55	124 aa		10.84	□□□□□ -0.67
UBR4-208	ENST00000459947	LEFTY1	O75610	366 aa		10.84	□□□□□ -0.67
UBR4-208	ENST00000459947	CD48	P09326	243 aa		10.84	□□□□□ -0.67
UBR4-208	ENST00000459947	CCNY	Q8ND76	341 aa		10.84	□□□□□ -0.67
UBR4-208	ENST00000459947	OLFM3	Q96PB7	478 aa		10.84	□□□□□ -0.67
UBR4-208	ENST00000459947	TM6SF2	Q9BZW4	377 aa		10.84	□□□□□ -0.67
UBR4-208	ENST00000459947	HOMER3	Q9NSC5	361 aa		10.84	□□□□□ -0.67
UBR4-208	ENST00000459947	ETNK2	Q9NVF9	386 aa		10.84	□□□□□ -0.67
UBR4-208	ENST00000459947	GOLGA6C	A6NDK9	693 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	GOLGA6B	A6NDN3	693 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947		J3KR12	359 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947		K7ERQ8	282 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	KHNYN	O15037	678 aa	Known RBP	10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	YKT6	O15498	198 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	KIF5C	O60282	957 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	ZNF806	P0C7X5	589 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	GOLGA6D	P0CG33	693 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	BCKDHB	P21953	392 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	MPL	P40238	635 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	OR14C36	Q8NHC7	312 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	NAP1L3	Q99457	506 aa	Predicted RBP	10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	GOLGA6A	Q9NYA3	693 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	SLC6A14	Q9UN76	642 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	ATG2B	Q96BY7	2078 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	UPK3BL1	B0FP48	263 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	UPK3BL2	E5RIL1	263 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	PEX5	P50542	639 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	ADPRH	P54922	357 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	NAPEPLD	Q6IQ20	393 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	DCP2	Q8IU60	420 aa	Known RBP	10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	ARRDC3	Q96B67	414 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	HSPA12B	Q96MM6	686 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	IL12RB2	Q99665	862 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	ZNF821	O75541	412 aa	Predicted RBP	10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	ADRB3	P13945	408 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	CCNB1	P14635	433 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	RPS21	P63220	83 aa	Known RBP	10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	CNTN1	Q12860	1018 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	DCAF12L1	Q5VU92	463 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	NCEH1	Q6PIU2	408 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	IQCH	Q86VS3	1027 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	HORMAD1	Q86X24	394 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	RGL4	Q8IZJ4	473 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	GRIN3A	Q8TCU5	1115 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	QKI	Q96PU8	341 aa	Known RBP eCLIP	10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	SALL4	Q9UJQ4	1053 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	PHTF1	Q9UMS5	762 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	HEY1	Q9Y5J3	304 aa		10.83	□□□□□ -0.68
UBR4-208	ENST00000459947	EML5	Q05BV3	1969 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	INSIG1	O15503	277 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	SERPINF2	P08697	491 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	AKT2	P31751	481 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	PRKD1	Q15139	912 aa	Predicted RBP	10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	NOMO1	Q15155	1222 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	TMEM52B	Q4KMG9	183 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	AGBL4	Q5VU57	503 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	CCDC70	Q6NSX1	233 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	CHST14	Q8NCH0	376 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	ATL2	Q8NHH9	583 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	RLN3	Q8WXF3	142 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	NEUROG2	Q9H2A3	272 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	RAD18	Q9NS91	495 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	POLR3B	Q9NW08	1133 aa	Predicted RBP	10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	RBM22	Q9NW64	420 aa	Known RBP eCLIP	10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	REV3L	O60673	3130 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	C16orf96	A6NNT2	1141 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	PSMD3	O43242	534 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	UGT2B4	P06133	528 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	PIP5KL1	Q5T9C9	394 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	AADAT	Q8N5Z0	425 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	CXorf40A	Q8TE69	158 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	PBK	Q96KB5	322 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	KLHL32	Q96NJ5	620 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	MTG2	Q9H4K7	406 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	PILRB	Q9UKJ0	227 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	ATP8A1	Q9Y2Q0	1164 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	CP	P00450	1065 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	CR2	P20023	1033 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	DRD3	P35462	400 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	GRIA4	P48058	902 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	LIMK1	P53667	647 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	CREB5	Q02930	508 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	GBE1	Q04446	702 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	PLA2G2C	Q5R387	149 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	ARMC12	Q5T9G4	340 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	MEI1	Q5TIA1	1274 aa		10.82	□□□□□ -0.68
UBR4-208	ENST00000459947	SLC23A3	Q6PIS1	610 aa		10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms