RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 GLIS3Q8NEA6 775 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 ADAM32Q8TC27 787 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 S100ZQ8WXG8 99 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 NACC2Q96BF6 587 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 NDNQ99608 321 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 PORCNQ9H237 461 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 ALG9Q9H6U8 611 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 SETD4Q9NVD3 440 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 DNAJC11Q9NVH1 559 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 COMMD9Q9P000 198 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 SAE1Q9UBE0 346 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 ZNF221Q9UK13 617 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 NFASCO94856 1347 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 IQGAP1P46940 1657 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 TMEM150BA6NC51 233 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 LIN7AO14910 233 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 RTN3O95197 1032 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 TRUB2O95900 331 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 TOP3BO95985 862 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 TYMPP19971 482 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 DGKAP23743 735 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 YWHAQP27348 245 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 HUNKP57058 714 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 CLHC1Q8NHS4 586 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 CCDC115Q96NT0 180 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 ACE2Q9BYF1 805 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 ULBP1Q9BZM6 244 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 GALNT8Q9NY28 637 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 CLIC5Q9NZA1 410 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 MORF4L1Q9UBU8 362 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 ZNF112Q9UJU3 913 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 RPS6KA6Q9UK32 745 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 SLC12A4Q9UP95 1085 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 ERCC6L2Q5T890 1561 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 hCG_1818297A0A087WSY0 165 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 A0A1W2PQ72 361 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 GRIA4P48058 902 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 MARCKSL1P49006 195 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 PFKFB4Q16877 469 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 PRR23CQ6ZRP0 262 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 ITIH5Q86UX2 942 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 PEX5LQ8IYB4 626 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 PTGR2Q8N8N7 351 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 ZNF670Q9BS34 389 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 SLITRK2Q9H156 845 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 SEMA4BQ9NPR2 832 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 CRYL1Q9Y2S2 319 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 AK5Q9Y6K8 562 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 UMODL1Q5DID0 1318 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 CYP3A7-CYP3A51PA0A087WV96 503 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 SPTLC1O15269 473 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 ZBTB14O43829 449 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 MLYCDO95822 493 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 IGSF6O95976 241 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 CCDC166P0CW27 439 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 WARSP23381 471 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 CYP3A7P24462 503 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 GABRB2P47870 512 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 RPS6KA3P51812 740 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 CDC42P60953 191 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 CRY1Q16526 586 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 LY6KQ17RY6 165 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 ZFP69Q49AA0 526 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 UTS2BQ765I0 119 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 TRMT11Q7Z4G4 463 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 PCSK9Q8NBP7 692 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 KBTBD8Q8NFY9 601 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 SNRNP25Q9BV90 132 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 SLCO1B3Q9NPD5 702 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 RPH3AQ9Y2J0 694 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 TISP43B9A030 160 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 RGL2O15211 777 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 SEC24AO95486 1093 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 ADRB2P07550 413 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 ZNF286BP0CG31 522 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 TAL1P17542 331 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 NPR2P20594 1047 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 NUMBP49757 651 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 ZNF846Q147U1 533 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 GRPEL2Q8TAA5 225 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 SLC16A10Q8TF71 515 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 TCF12Q99081 682 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 MRPL57Q9BQC6 102 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 IDI2Q9BXS1 227 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 CIPCQ9C0C6 399 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 KLHL1Q9NR64 748 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 SPATA31A6Q5VVP1 1343 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 ADAMTS13Q76LX8 1427 aa10.35□□□□□ -0.75
LIMCH1-203ENST00000396595 NOTOA8MTQ0 251 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 NOS1APO75052 506 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 PSMD10O75832 226 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 ALDH2P05091 517 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 COX7A2P14406 83 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 VAV1P15498 845 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 ABCG1P45844 678 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 RAB25P57735 213 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 SREBF2Q12772 1141 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 RIPK1Q13546 671 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 MPP2Q14168 576 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 STXBP5Q5T5C0 1151 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms