RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 GABPB2Q8TAK5 448 aaPredicted RBP18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 LRRC8CQ8TDW0 803 aa18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 GDPD5Q8WTR4 605 aa18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 MZB1Q8WU39 189 aa18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 MGME1Q9BQP7 344 aa18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 FEM1AQ9BSK4 669 aa18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 RPS6KL1Q9Y6S9 549 aa18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 KRT37O76014 449 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 ALDH1A2O94788 518 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 MT-CYBP00156 380 aaPredicted RBP18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 EPOP01588 193 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 FOXN2P32314 431 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 ADRA1AP35348 466 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 SKIV2L2P42285 1042 aaKnown RBP18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 SERPINB9P50453 376 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 USP4Q13107 963 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 CRYMQ14894 314 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 SEPT7Q16181 437 aaKnown RBP18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 SLC5A9Q2M3M2 681 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 KBTBD12Q3ZCT8 623 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 GALNTL6Q49A17 601 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 PCID2Q5JVF3 399 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 KDELC1Q6UW63 502 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 CELF5Q8N6W0 485 aaKnown RBP18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 FIBINQ8TAL6 211 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 ZNF398Q8TD17 642 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 IFT43Q96FT9 208 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 SEMA3CQ99985 751 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 VPS11Q9H270 941 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 ARNT2Q9HBZ2 717 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 MRM3Q9HC36 420 aaKnown RBP18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 SLC40A1Q9NP59 571 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 SOX13Q9UN79 622 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 SPAG7O75391 227 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 KRT38O76015 456 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 MT-ND3P03897 115 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 KRT4P19013 534 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 CNTFP26441 200 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 ALDH3A1P30838 453 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 HNRNPH1P31943 449 aaKnown RBP18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 ZNF77Q15935 545 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 SPDYAQ5MJ70 313 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 FYB2Q5VWT5 728 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 RANBP10Q6VN20 620 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 PRPF39Q86UA1 669 aaKnown RBP18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 NUP210Q8TEM1 1887 aaPredicted RBP18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 FEM1CQ96JP0 617 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 MRGPRX2Q96LB1 330 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 MOCS1Q9NZB8 636 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 TXNDC16Q9P2K2 825 aa18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 ARIH1Q9Y4X5 557 aaPredicted RBP18.41■□□□□ 0.54
CCDC88C-203ENST00000389856 MIA3Q5JRA6 1907 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 FAM159BA6NKW6 160 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 FOXO6A8MYZ6 492 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 ATP5HO75947 161 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 PAMP19021 973 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 HLA-DPA1P20036 260 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 RPA3P35244 121 aaPredicted RBP18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 CSKP41240 450 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 MAXP61244 160 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 NTHL1P78549 312 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 DSC2Q02487 901 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 SLC18A2Q05940 514 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 MGAT5Q09328 741 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 TPGS1Q6ZTW0 290 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 NLRP9Q7RTR0 991 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 TMEM135Q86UB9 458 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 PPM1NQ8N819 430 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 BANPQ8N9N5 519 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 ARRDC2Q8TBH0 407 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 TADA1Q96BN2 335 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 ZNF669Q96BR6 464 aaPredicted RBP18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 TIFAQ96CG3 184 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 MTBPQ96DY7 904 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 ZNF419Q96HQ0 510 aaPredicted RBP18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 APOL2Q9BQE5 337 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 SMG9Q9H0W8 520 aaKnown RBP18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 MLXIPLQ9NP71 852 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 SCUBE2Q9NQ36 999 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 KLC4Q9NSK0 619 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 NSMCE4AQ9NXX6 385 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 USH1CQ9Y6N9 552 aa18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 MKI67P46013 3256 aaKnown RBP18.4■□□□□ 0.54
CCDC88C-203ENST00000389856 SCAMP3O14828 347 aaKnown RBP18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 ATP9BO43861 1147 aa18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 EDF1O60869 148 aaKnown RBP18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 FGF1P05230 155 aa18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 CEBPBP17676 345 aa18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 ADRA1DP25100 572 aa18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 MAPK8P45983 427 aa18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 PLK1P53350 603 aa18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 NSUN2Q08J23 767 aaKnown RBP eCLIP18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 NIPAL4Q0D2K0 466 aa18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 BNIP1Q12981 228 aa18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 PCSK7Q16549 785 aa18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 FBXW10Q5XX13 1052 aa18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 ARID3BQ8IVW6 561 aaPredicted RBP18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms