RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ZNF776Q68DI1 518 aaPredicted RBP10.26□□□□□ -0.77
USP54-201ENST00000339859 LVRNQ6Q4G3 990 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 RAVER1Q8IY67 606 aaKnown RBP10.26□□□□□ -0.77
USP54-201ENST00000339859 ZCCHC9Q8N567 271 aaKnown RBP10.26□□□□□ -0.77
USP54-201ENST00000339859 ARMC2Q8NEN0 867 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 UBE2E3Q969T4 207 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 SGF29Q96ES7 293 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 ZNF599Q96NL3 588 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 VCX3AQ9NNX9 186 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 PHTF1Q9UMS5 762 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 TXNDC9O14530 226 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 TEX28O15482 410 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 GUCA1CO95843 209 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 RPA3P35244 121 aaPredicted RBP10.26□□□□□ -0.77
USP54-201ENST00000339859 SPAM1P38567 509 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 GPD2P43304 727 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 KRT72Q14CN4 511 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 CHI3L2Q15782 390 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 CIR1Q86X95 450 aaPredicted RBP10.26□□□□□ -0.77
USP54-201ENST00000339859 GALNT13Q8IUC8 556 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 TDHQ8IZJ6 230 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 HES6Q96HZ4 224 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 QKIQ96PU8 341 aaKnown RBP eCLIP10.26□□□□□ -0.77
USP54-201ENST00000339859 ELOVL6Q9H5J4 265 aa10.26□□□□□ -0.77
USP54-201ENST00000339859 GPN3Q9UHW5 284 aaPredicted RBP10.26□□□□□ -0.77
USP54-201ENST00000339859 DDX60LQ5H9U9 1706 aaKnown RBP10.25□□□□□ -0.77
USP54-201ENST00000339859 MFSD11O43934 449 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 HOXA11P31270 313 aaPredicted RBP10.25□□□□□ -0.77
USP54-201ENST00000339859 PBX1P40424 430 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 CLCN5P51795 746 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 DEFB103AP81534 67 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 DDX39BQ13838 428 aaKnown RBP10.25□□□□□ -0.77
USP54-201ENST00000339859 ATP13A4Q4VNC1 1196 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 USP39Q53GS9 565 aaKnown RBP10.25□□□□□ -0.77
USP54-201ENST00000339859 WDR45BQ5MNZ6 344 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 BEND6Q5SZJ8 279 aaPredicted RBP10.25□□□□□ -0.77
USP54-201ENST00000339859 STXBP5Q5T5C0 1151 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 NEPROQ6NW34 567 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 SMARCD2Q92925 531 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 P2RY13Q9BPV8 354 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 OSBPL2Q9H1P3 480 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 DCTN4Q9UJW0 460 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 GLYATL1P3A0A0U1RQE8 302 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 LRIG2O94898 1065 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 ADH1BP00325 375 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 PYGBP11216 843 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 KCNK10P57789 538 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 TEX44Q53QW1 395 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 TEDDM1Q5T9Z0 273 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 LINGO4Q6UY18 593 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 OR7D4Q8NG98 312 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 CDC42EP4Q9H3Q1 356 aaKnown RBP10.25□□□□□ -0.77
USP54-201ENST00000339859 LZTS1Q9Y250 596 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 ILVBLA1L0T0 632 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 TGM5O43548 720 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 KRT6AP02538 564 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 KRT6BP04259 564 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 TSHRP16473 764 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 MC4RP32245 332 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 KRT6CP48668 564 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 BTKQ06187 659 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 SUZ12Q15022 739 aaKnown RBP10.25□□□□□ -0.77
USP54-201ENST00000339859 NOMO1Q15155 1222 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 POTEHQ6S545 545 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 CRELD2Q6UXH1 353 aaPredicted RBP10.25□□□□□ -0.77
USP54-201ENST00000339859 ANKRD33Q7Z3H0 272 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 SLC39A11Q8N1S5 342 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 TNIP2Q8NFZ5 429 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 TMEM40Q8WWA1 233 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 CCDC124Q96CT7 223 aaKnown RBP10.25□□□□□ -0.77
USP54-201ENST00000339859 THOC1Q96FV9 657 aaKnown RBP10.25□□□□□ -0.77
USP54-201ENST00000339859 P2RY11Q96G91 374 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 PRMT1Q99873 361 aaKnown RBP10.25□□□□□ -0.77
USP54-201ENST00000339859 GBA3Q9H227 469 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 RMND5AQ9H871 391 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 MANSC1Q9H8J5 431 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 ACTR8Q9H981 624 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 SAE1Q9UBE0 346 aaPredicted RBP10.25□□□□□ -0.77
USP54-201ENST00000339859 CRYL1Q9Y2S2 319 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 WNT6Q9Y6F9 365 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 CASQ2O14958 399 aaPredicted RBP10.25□□□□□ -0.77
USP54-201ENST00000339859 KIAA0355O15063 1070 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 INPP4BO15327 924 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 CYP11A1P05108 521 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 WNT3AP56704 352 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 NAA20P61599 178 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 TMEM110Q86TL2 294 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 FBXO39Q8N4B4 442 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 OR4L1Q8NH43 312 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 PPP1R36Q96LQ0 422 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 TLR10Q9BXR5 811 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 ILKAPQ9H0C8 392 aaPredicted RBP10.25□□□□□ -0.77
USP54-201ENST00000339859 ARHGAP26Q9UNA1 814 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 AP5Z1O43299 807 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 NDST3O95803 873 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 PROZP22891 400 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 SKIV2L2P42285 1042 aaKnown RBP10.25□□□□□ -0.77
USP54-201ENST00000339859 CBX2Q14781 532 aaPredicted RBP10.25□□□□□ -0.77
USP54-201ENST00000339859 DLG2Q15700 870 aa10.25□□□□□ -0.77
USP54-201ENST00000339859 FAM133BQ5BKY9 247 aaKnown RBP10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms