RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 PAFAH1B3Q15102 231 aaKnown RBP10.18□□□□□ -0.78
LIG3-201ENST00000262327 PPP1R3AQ16821 1122 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 PIGGQ5H8A4 983 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 IL23RQ5VWK5 629 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 LIPMQ5VYY2 423 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 ZC3HC1Q86WB0 502 aaKnown RBP10.18□□□□□ -0.78
LIG3-201ENST00000262327 RNF168Q8IYW5 571 aaPredicted RBP10.18□□□□□ -0.78
LIG3-201ENST00000262327 CENPLQ8N0S6 344 aaPredicted RBP10.18□□□□□ -0.78
LIG3-201ENST00000262327 ARHGAP18Q8N392 663 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 SREK1Q8WXA9 508 aaKnown RBP10.18□□□□□ -0.78
LIG3-201ENST00000262327 RNF34Q969K3 372 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 TSNARE1Q96NA8 513 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 FAM96AQ9H5X1 160 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 VCX3AQ9NNX9 186 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 TNFRSF12AQ9NP84 129 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 GTF2IRD1Q9UHL9 959 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 NUDT5Q9UKK9 219 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 TMCO1Q9UM00 188 aa10.18□□□□□ -0.78
LIG3-201ENST00000262327 UBQLN1Q9UMX0 589 aaKnown RBP10.18□□□□□ -0.78
LIG3-201ENST00000262327 HEMK1Q9Y5R4 338 aaPredicted RBP10.18□□□□□ -0.78
LIG3-201ENST00000262327 THSD7BQ9C0I4 1608 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 DOCK3Q8IZD9 2030 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 ATP6AP2A0A1C7CYW4 349 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 TMEM221A6NGB7 291 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 PIRO00625 290 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 CCL22O00626 93 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 PMPCBO75439 489 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 DAB1O75553 588 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 ATP6AP2O75787 350 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 PGK1P00558 417 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 F2P00734 622 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 SOX11P35716 441 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 PPARGP37231 505 aaPredicted RBP10.17□□□□□ -0.78
LIG3-201ENST00000262327 NME5P56597 212 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 PRKCZQ05513 592 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 CBX3Q13185 183 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 LSAMPQ13449 338 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 SEPT6Q14141 434 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 ADGRE1Q14246 886 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 GRM2Q14416 872 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 KYAT1Q16773 422 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 DCAF4L1Q3SXM0 396 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 PAN2Q504Q3 1202 aaKnown RBP10.17□□□□□ -0.78
LIG3-201ENST00000262327 RARS2Q5T160 578 aaKnown RBP10.17□□□□□ -0.78
LIG3-201ENST00000262327 MAP3K21Q5TCX8 1036 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 NOTUMQ6P988 496 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 C16orf89Q6UX73 402 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 CNTD1Q8N815 330 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 FAM110BQ8TC76 370 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 TRIB2Q92519 343 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 SLC39A3Q9BRY0 314 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 C1QTNF1Q9BXJ1 281 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 DRC3Q9H069 523 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 TKTL2Q9H0I9 626 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 ADAMTS10Q9H324 1103 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 PLEKHA5Q9HAU0 1116 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 WDR6Q9NNW5 1121 aaKnown RBP10.17□□□□□ -0.78
LIG3-201ENST00000262327 SAGE1Q9NXZ1 904 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 MYBPHLA2RUH7 354 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 C9JVG2 144 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 CASQ2O14958 399 aaPredicted RBP10.17□□□□□ -0.78
LIG3-201ENST00000262327 VILLO15195 856 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 CHRNA4P43681 627 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 NAB1Q13506 487 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 ARHGEF6Q15052 776 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 ANO4Q32M45 955 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 ZYG11AQ6WRX3 759 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 TRPV1Q8NER1 839 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 PHF21BQ96EK2 531 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 ZNF419Q96HQ0 510 aaPredicted RBP10.17□□□□□ -0.78
LIG3-201ENST00000262327 ELMO2Q96JJ3 720 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 SERPINI1Q99574 410 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 KATNAL1Q9BW62 490 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 UPF3AQ9H1J1 476 aaKnown RBP10.17□□□□□ -0.78
LIG3-201ENST00000262327 CCDC167Q9P0B6 97 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 OR12D3Q9UGF7 316 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 SRRDQ9UH36 339 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 RIMS3Q9UJD0 308 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 ADAM28Q9UKQ2 775 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 TBC1D30Q9Y2I9 924 aa10.17□□□□□ -0.78
LIG3-201ENST00000262327 CASP8AP2Q9UKL3 1982 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 TMEM114B3SHH9 223 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 HAS3O00219 553 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 TIMM44O43615 452 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 E2F6O75461 281 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 LRIG2O94898 1065 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 KCNA5P22460 613 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 ME2P23368 584 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 CSHL1Q14406 222 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 PCSK7Q16549 785 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 MYLK3Q32MK0 819 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 ZNF789Q5FWF6 425 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 TSTD2Q5T7W7 516 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 KCTD11Q693B1 232 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 LRRC8EQ6NSJ5 796 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 KLHDC10Q6PID8 442 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 CNSTQ6PJW8 725 aa10.16□□□□□ -0.78
LIG3-201ENST00000262327 LDB1Q86U70 411 aaPredicted RBP10.16□□□□□ -0.78
LIG3-201ENST00000262327 TXNDC5Q8NBS9 432 aaKnown RBP10.16□□□□□ -0.78
LIG3-201ENST00000262327 OR9I1Q8NGQ6 314 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms