RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 RAI2Q9Y5P3 530 aa11.72□□□□□ -0.53
VPS4A-201ENST00000254950 ADAM12O43184 909 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 HAUS5O94927 633 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 HNRNPA1P09651 372 aaKnown RBP eCLIP11.71□□□□□ -0.53
VPS4A-201ENST00000254950 CPA3P15088 417 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 IGFBP6P24592 240 aaPredicted RBP11.71□□□□□ -0.53
VPS4A-201ENST00000254950 TRNP1Q6NT89 227 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 CHST9Q7L1S5 443 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 ANKS1BQ7Z6G8 1248 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 FAM136AQ96C01 138 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 CCDC126Q96EE4 140 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 DRC3Q9H069 523 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 SUDS3Q9H7L9 328 aaPredicted RBP11.71□□□□□ -0.53
VPS4A-201ENST00000254950 MARCOQ9UEW3 520 aaPredicted RBP11.71□□□□□ -0.53
VPS4A-201ENST00000254950 ZFP69BQ9UJL9 534 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 TRIM33Q9UPN9 1127 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 USH1CQ9Y6N9 552 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 FAM237BA0A1B0GVD1 139 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 MAP4P27816 1152 aaKnown RBP11.71□□□□□ -0.53
VPS4A-201ENST00000254950 ABCG1P45844 678 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 NRIP1P48552 1158 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 AP1S1P61966 158 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 SLC12A1Q13621 1099 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 CSHL1Q14406 222 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 N4BP2L1Q5TBK1 243 aaPredicted RBP11.71□□□□□ -0.53
VPS4A-201ENST00000254950 LMNTD2Q8IXW0 634 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 OR6K2Q8NGY2 324 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 SLC44A1Q8WWI5 657 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 SEC14L1Q92503 715 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 HDAC10Q969S8 669 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 TSGA13Q96PP4 275 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 TAS2R13Q9NYV9 303 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 CD274Q9NZQ7 290 aa11.71□□□□□ -0.53
VPS4A-201ENST00000254950 PRRC2BQ5JSZ5 2229 aaKnown RBP11.71□□□□□ -0.53
VPS4A-201ENST00000254950 FAM95CA0A1B0GW59 222 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 INSIG1O15503 277 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 ACVRL1P37023 503 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 SERPINB4P48594 390 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 SLC10A7Q0GE19 358 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 KCNJ11Q14654 390 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 TEAD2Q15562 447 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 EXOC3L1Q86VI1 746 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 TMEM173Q86WV6 379 aaPredicted RBP11.71□□□□□ -0.54
VPS4A-201ENST00000254950 HS6ST3Q8IZP7 471 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 MYO19Q96H55 970 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 RIPOR3Q96MK2 946 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 USP29Q9HBJ7 922 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 TCRBV7S3A2A0A539 114 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 CCDC22O60826 627 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 HLA-DQB2P05538 268 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 CA3P07451 260 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 VAV1P15498 845 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 GRM3Q14832 879 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 ALFQ53S48 1182 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 RHBDF2Q6PJF5 856 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 PACS1Q6VY07 963 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 TTC7BQ86TV6 843 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 TRABD2AQ86V40 505 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 STK40Q8N2I9 435 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 CPA6Q8N4T0 437 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 ACMSDQ8TDX5 336 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 PPM1EQ8WY54 764 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 CHRAC1Q9NRG0 131 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 EVLQ9UI08 416 aaPredicted RBP11.71□□□□□ -0.54
VPS4A-201ENST00000254950 TRPM7Q96QT4 1865 aa11.71□□□□□ -0.54
VPS4A-201ENST00000254950 PTPRFP10586 1907 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 C1orf232A0A0U1RR37 186 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 PRR23AA6NEV1 266 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 SH3BP5O60239 455 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 CLCN5P51795 746 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 OCRLQ01968 901 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 PRKD1Q15139 912 aaPredicted RBP11.7□□□□□ -0.54
VPS4A-201ENST00000254950 GRAMD4Q6IC98 578 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 FBXL19Q6PCT2 694 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 AFTPHQ6ULP2 937 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 UMODL1-AS1Q8N2C9 162 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 SEC16BQ96JE7 1060 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 SH3GL2Q99962 352 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 ZFP14Q9HCL3 533 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.7□□□□□ -0.54
VPS4A-201ENST00000254950 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.7□□□□□ -0.54
VPS4A-201ENST00000254950 A8MX80 341 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 J3KR12 359 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 STC2O76061 302 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 TRIM16O95361 564 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 RHOP08100 348 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 ITGA2BP08514 1039 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 GRK2P25098 689 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 CSKP41240 450 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 GAD2Q05329 585 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 ZDHHC14Q8IZN3 488 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 PPP1R16AQ96I34 528 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 RETREG1Q9H6L5 497 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 BRD9Q9H8M2 597 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 PKD2L2Q9NZM6 624 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 HSFX1Q9UBD0 423 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 BCAP29Q9UHQ4 241 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 APPL1Q9UKG1 709 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 ANKRD6Q9Y2G4 727 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 USP1O94782 785 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 246.4 ms