RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 FSCN1Q16658 493 aaKnown RBP4.71□□□□□ -1.65
SCN1A-220ENST00000641603 SMIM5Q71RC9 77 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 ASRGL1Q7L266 308 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 OR7G1Q8NGA0 311 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 UCMAQ8WVF2 138 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 KCTD4Q8WVF5 259 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF285Q96NJ3 590 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 SLC38A2Q96QD8 506 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 LBHD1Q9BQE6 289 aaPredicted RBP4.71□□□□□ -1.65
SCN1A-220ENST00000641603 NUSAP1Q9BXS6 441 aaKnown RBP4.71□□□□□ -1.65
SCN1A-220ENST00000641603 SPDYE16A6NNV3 312 aaPredicted RBP4.71□□□□□ -1.65
SCN1A-220ENST00000641603 BCAS2O75934 225 aaPredicted RBP4.71□□□□□ -1.65
SCN1A-220ENST00000641603 RPL10AP62906 217 aaKnown RBP4.71□□□□□ -1.65
SCN1A-220ENST00000641603 STX4Q12846 297 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 NFIAQ12857 509 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 CTC1Q2NKJ3 1217 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 PAGE2BQ5JRK9 111 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 MIIPQ5JXC2 388 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 LPCAT1Q8NF37 534 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 RIBC2Q9H4K1 309 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 FOLH1BQ9HBA9 442 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 ARHGAP28Q9P2N2 729 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 ACSL5Q9ULC5 683 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 ADAMDEC1O15204 470 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 SUPT7LO94864 414 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 MYBP10242 640 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 NPR2P20594 1047 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 GRIA3P42263 894 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 TOB1P50616 345 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 ANKDD1AQ495B1 522 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 PABPC1LQ4VXU2 614 aaKnown RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 XKR3Q5GH77 459 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 LRRC55Q6ZSA7 311 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 MEIOBQ8N635 442 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 ZUFSPQ96AP4 578 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 IL22Q9GZX6 179 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 SIK2Q9H0K1 926 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 NEK6Q9HC98 313 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 DNAJB9Q9UBS3 223 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 VPS28Q9UK41 221 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 MAGED2Q9UNF1 606 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 COL3A1P02461 1466 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 NDUFS3O75489 264 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 PGK2P07205 417 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 MYL9P24844 172 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 AIF1P55008 147 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 HIST2H2ACQ16777 129 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF404Q494X3 552 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 SLX4IPQ5VYV7 408 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 HIST2H2AA3Q6FI13 130 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 KCTD8Q6ZWB6 473 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 GATAD2AQ86YP4 633 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 MAGEE2Q8TD90 523 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 MKRN2Q9H000 416 aaKnown RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 IKZF3Q9UKT9 509 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 REXO2Q9Y3B8 237 aaKnown RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 V9GYQ6 96 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 ARHGAP23Q9P227 1491 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 DLGAP1O14490 977 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 RAP2AP10114 183 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 ACO1P21399 889 aaKnown RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 CDC25CP30307 473 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 EEFSECP57772 596 aaKnown RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 FAAP100Q0VG06 881 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 TKFCQ3LXA3 575 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 KSR1Q8IVT5 923 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 TRMT13Q9NUP7 481 aaKnown RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 KLHL28Q9NXS3 571 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 TNFRSF10DQ9UBN6 386 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 PCDHB12Q9Y5F1 795 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 ZCCHC11Q5TAX3 1644 aaKnown RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 CYP2C18P33260 490 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 ABATP80404 500 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 PYDC2Q56P42 97 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 FAXCQ5TGI0 409 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 IL23RQ5VWK5 629 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 ANKS6Q68DC2 871 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 NT5DC4Q86YG4 428 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 UBQLNLQ8IYU4 475 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 NCSTNQ92542 709 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 FRMD6Q96NE9 622 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 TEFMQ96QE5 360 aaKnown RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 PHF12Q96QT6 1004 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 MIPEPQ99797 713 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 ZDHHC18Q9NUE0 388 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 VANGL2Q9ULK5 521 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 I3L521 148 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 PIK3CBP42338 1070 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 ATP4BP51164 291 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 DPY19L1Q2PZI1 675 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 OR52E8Q6IFG1 317 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 MAEAQ7L5Y9 396 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 PTF1AQ7RTS3 328 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 HERC6Q8IVU3 1022 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 BANPQ8N9N5 519 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 TSEN34Q9BSV6 310 aaKnown RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 DPY30Q9C005 99 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 GPHNQ9NQX3 736 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-220ENST00000641603 MTRRQ9UBK8 725 aa4.71□□□□□ -1.66
SCN1A-220ENST00000641603 PCDHA11Q9Y5I1 949 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms