RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 FERMT1Q9BQL6 677 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 PABPC3Q9H361 631 aaKnown RBP19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 SEPT10Q9P0V9 454 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 AMACRQ9UHK6 382 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 PPM1HQ9ULR3 514 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 NCKAP1Q9Y2A7 1128 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 PLXND1Q9Y4D7 1925 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 SPAG17Q6Q759 2223 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 KPNA3O00505 521 aaPredicted RBP19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 MID1O15344 667 aa19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 MTSS1O43312 755 aa19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 CEP104O60308 925 aa19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 C7P10643 843 aa19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 MAPK8P45983 427 aa19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 CSNK1DP48730 415 aa19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 NSUN2Q08J23 767 aaKnown RBP eCLIP19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 GRM3Q14832 879 aa19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 ARSIQ5FYB1 569 aa19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 SLC13A5Q86YT5 568 aaPredicted RBP19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 TEX26Q8N6G2 289 aa19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 LRRN4Q8WUT4 740 aa19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 MAIP1Q8WWC4 291 aa19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 PPP1R16AQ96I34 528 aa19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 PBKQ96KB5 322 aa19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 QKIQ96PU8 341 aaKnown RBP eCLIP19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 OMDQ99983 421 aa19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 NT5MQ9NPB1 228 aa19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 ITM2CQ9NQX7 267 aa19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 DYRK4Q9NR20 520 aa19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 RBM22Q9NW64 420 aaKnown RBP eCLIP19.38■□□□□ 0.692e-7■■■□□ 15.8
SQSTM1-216ENST00000626660 USP36Q9P275 1121 aaKnown RBP19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 EVLQ9UI08 416 aaPredicted RBP19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 CYP8B1Q9UNU6 501 aa19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 WASF2Q9Y6W5 498 aa19.38■□□□□ 0.69
SQSTM1-216ENST00000626660 KCNK1O00180 336 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 LEFTY1O75610 366 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 RPP40O75818 363 aaKnown RBP19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 ZNF189O75820 626 aaPredicted RBP19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 JCHAINP01591 159 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 ATP1A1P05023 1023 aaKnown RBP19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 OXTRP30559 389 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 CXCR5P32302 372 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 P2RY2P41231 377 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 TPMTP51580 245 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 EIF3EP60228 445 aaKnown RBP19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 AP1S1P61966 158 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 IFI35P80217 286 aaPredicted RBP19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 ITKQ08881 620 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 CCDC15Q0P6D6 951 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 KLF1Q13351 362 aaPredicted RBP19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 PRKD1Q15139 912 aaPredicted RBP19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 SLC45A4Q5BKX6 768 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 USP30Q70CQ3 517 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 SRLQ86TD4 932 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 KBTBD6Q86V97 674 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 C11orf74Q86VG3 221 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 CDKL3Q8IVW4 592 aaPredicted RBP19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 C17orf53Q8N3J3 647 aaPredicted RBP19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 GAB3Q8WWW8 586 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 RLN3Q8WXF3 142 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 ATOH1Q92858 354 aaPredicted RBP19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 OSBPL1AQ9BXW6 950 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 FBXL12Q9NXK8 326 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 SARDHQ9UL12 918 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 ANKRD36A6QL64 1941 aa19.37■□□□□ 0.69
SQSTM1-216ENST00000626660 MAP3K13O43283 966 aa19.36■□□□□ 0.69
SQSTM1-216ENST00000626660 GFRA3O60609 400 aa19.36■□□□□ 0.69
SQSTM1-216ENST00000626660 RNASEH2AO75792 299 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-216ENST00000626660 CTSLP07711 333 aa19.36■□□□□ 0.69
SQSTM1-216ENST00000626660 RBP3P10745 1247 aa19.36■□□□□ 0.69
SQSTM1-216ENST00000626660 SCNN1BP51168 640 aa19.36■□□□□ 0.69
SQSTM1-216ENST00000626660 MAP7D1Q3KQU3 841 aa19.36■□□□□ 0.69
SQSTM1-216ENST00000626660 RALGPS1Q5JS13 557 aa19.36■□□□□ 0.69
SQSTM1-216ENST00000626660 DARS2Q6PI48 645 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-216ENST00000626660 CEP68Q76N32 757 aa19.36■□□□□ 0.69
SQSTM1-216ENST00000626660 HDDC3Q8N4P3 179 aa19.36■□□□□ 0.69
SQSTM1-216ENST00000626660 TUBGCP5Q96RT8 1024 aa19.36■□□□□ 0.69
SQSTM1-216ENST00000626660 MGME1Q9BQP7 344 aa19.36■□□□□ 0.69
SQSTM1-216ENST00000626660 CPEB1Q9BZB8 566 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-216ENST00000626660 POLR1EQ9GZS1 481 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-216ENST00000626660 ATP13A3Q9H7F0 1226 aa19.36■□□□□ 0.69
SQSTM1-216ENST00000626660 SCUBE2Q9NQ36 999 aa19.36■□□□□ 0.69
SQSTM1-216ENST00000626660 INVSQ9Y283 1065 aa19.36■□□□□ 0.69
SQSTM1-216ENST00000626660 TTLL3Q9Y4R7 772 aa19.36■□□□□ 0.69
SQSTM1-216ENST00000626660 A0A1W2PP55 124 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 MUSKO15146 869 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 IGLV3-19P01714 112 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 FGGP02679 453 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 UGT2B4P06133 528 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 CES1P23141 567 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 CD6P30203 668 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 GKP32189 559 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 RGRP47804 291 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 NUMA1Q14980 2115 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 POM121L1PQ3SYA9 428 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 GDPD4Q6W3E5 623 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 SLC36A4Q6YBV0 504 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 B4GALNT4Q76KP1 1039 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 FAM124AQ86V42 546 aa19.35■□□□□ 0.69
SQSTM1-216ENST00000626660 PGBD5Q8N414 524 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms