RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 LAYNQ6UX15 382 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 GAS2L3Q86XJ1 694 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 CPNE8Q86YQ8 564 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 OR6K2Q8NGY2 324 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 ZNF564Q8TBZ8 553 aaPredicted RBP15.29■□□□□ 0.04
VPS39-210ENST00000568357 ZCCHC14Q8WYQ9 949 aaKnown RBP15.29■□□□□ 0.04
VPS39-210ENST00000568357 HSPH1Q92598 858 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 HDAC8Q9BY41 377 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 ZDHHC5Q9C0B5 715 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 KDM4CQ9H3R0 1056 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 DEF6Q9H4E7 631 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 NHEJ1Q9H9Q4 299 aaPredicted RBP15.29■□□□□ 0.04
VPS39-210ENST00000568357 IL21RQ9HBE5 538 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 DNAAF2Q9NVR5 837 aaKnown RBP15.29■□□□□ 0.04
VPS39-210ENST00000568357 CTTNBP2NLQ9P2B4 639 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 SETXQ7Z333 2677 aaKnown RBP15.28■□□□□ 0.04
VPS39-210ENST00000568357 TMEM8BA6NDV4 472 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 ZSCAN5CA6NGD5 496 aaPredicted RBP15.28■□□□□ 0.04
VPS39-210ENST00000568357 AKR1B15C9JRZ8 316 aaPredicted RBP15.28■□□□□ 0.04
VPS39-210ENST00000568357 OPHN1O60890 802 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 TMCC1O94876 653 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 GSRP00390 522 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 H2AFZP0C0S5 128 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 CD59P13987 128 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 AMPD1P23109 780 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 MAT2AP31153 395 aaKnown RBP15.28■□□□□ 0.04
VPS39-210ENST00000568357 PAPOLAP51003 745 aaKnown RBP15.28■□□□□ 0.04
VPS39-210ENST00000568357 RACK1P63244 317 aaKnown RBP15.28■□□□□ 0.04
VPS39-210ENST00000568357 HLA-BQ31612 363 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 MYLK3Q32MK0 819 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 INO80DQ53TQ3 878 aaPredicted RBP15.28■□□□□ 0.04
VPS39-210ENST00000568357 H2AFVQ71UI9 128 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 ERN2Q76MJ5 926 aaKnown RBP15.28■□□□□ 0.04
VPS39-210ENST00000568357 POLNQ7Z5Q5 900 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 ARHGAP12Q8IWW6 846 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 TP53INP2Q8IXH6 220 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 RYBPQ8N488 228 aaPredicted RBP15.28■□□□□ 0.04
VPS39-210ENST00000568357 NPWQ8N729 165 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 OR2AP1Q8NGE2 309 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 CCDC42Q96M95 316 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 SLC6A18Q96N87 628 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 ZDHHC6Q9H6R6 413 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 GAREM1Q9H706 876 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 PDFQ9HBH1 243 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.28■□□□□ 0.04
VPS39-210ENST00000568357 SPTLC3Q9NUV7 552 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 DONSONQ9NYP3 566 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 ANKRD6Q9Y2G4 727 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 MFHAS1Q9Y4C4 1052 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 SNX11Q9Y5W9 270 aa15.28■□□□□ 0.04
VPS39-210ENST00000568357 PCDH15Q96QU1 1955 aa15.27■□□□□ 0.04
VPS39-210ENST00000568357 KRIT1O00522 736 aa15.27■□□□□ 0.04
VPS39-210ENST00000568357 KCNK3O14649 394 aa15.27■□□□□ 0.04
VPS39-210ENST00000568357 PRAMEF11O60813 436 aa15.27■□□□□ 0.04
VPS39-210ENST00000568357 ZIC2O95409 532 aaPredicted RBP15.27■□□□□ 0.04
VPS39-210ENST00000568357 POP4O95707 220 aaKnown RBP15.27■□□□□ 0.04
VPS39-210ENST00000568357 WNT1P04628 370 aa15.27■□□□□ 0.04
VPS39-210ENST00000568357 TMEM253P0C7T8 217 aa15.27■□□□□ 0.04
VPS39-210ENST00000568357 IL4RP24394 825 aa15.27■□□□□ 0.04
VPS39-210ENST00000568357 GRIA4P48058 902 aa15.27■□□□□ 0.04
VPS39-210ENST00000568357 ZNF135P52742 658 aaPredicted RBP15.27■□□□□ 0.04
VPS39-210ENST00000568357 SNRPD1P62314 119 aaKnown RBP15.27■□□□□ 0.04
VPS39-210ENST00000568357 TEAD4Q15561 434 aa15.27■□□□□ 0.04
VPS39-210ENST00000568357 ATP13A4Q4VNC1 1196 aa15.27■□□□□ 0.04
VPS39-210ENST00000568357 ARHGAP36Q6ZRI8 547 aa15.27■□□□□ 0.04
VPS39-210ENST00000568357 TRIM69Q86WT6 500 aa15.27■□□□□ 0.04
VPS39-210ENST00000568357 CNGA4Q8IV77 575 aa15.27■□□□□ 0.04
VPS39-210ENST00000568357 TC2NQ8N9U0 490 aa15.27■□□□□ 0.04
VPS39-210ENST00000568357 TEKT4Q8WW24 435 aa15.27■□□□□ 0.04
VPS39-210ENST00000568357 CASKIN2Q8WXE0 1202 aa15.27■□□□□ 0.04
VPS39-210ENST00000568357 CTNNBL1Q8WYA6 563 aaPredicted RBP15.27■□□□□ 0.04
VPS39-210ENST00000568357 DYRK4Q9NR20 520 aa15.27■□□□□ 0.04
VPS39-210ENST00000568357 ETNK2Q9NVF9 386 aa15.27■□□□□ 0.04
VPS39-210ENST00000568357 UVRAGQ9P2Y5 699 aa15.27■□□□□ 0.04
VPS39-210ENST00000568357 ADAMTS20P59510 1910 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 ARHGAP42A6NI28 874 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 H3BRJ5 948 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 TAF4O00268 1085 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 INSIG1O15503 277 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 RNGTTO60942 597 aaKnown RBP15.26■□□□□ 0.03
VPS39-210ENST00000568357 PROSCO94903 275 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 CSRP1P21291 193 aaKnown RBP15.26■□□□□ 0.03
VPS39-210ENST00000568357 ITGB7P26010 798 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 TAS2R40P59535 323 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 CCDC15Q0P6D6 951 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 PIP4P1Q86T03 277 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 PRPF39Q86UA1 669 aaKnown RBP15.26■□□□□ 0.03
VPS39-210ENST00000568357 DEFB124Q8NES8 71 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 TSC1Q92574 1164 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 PPP1R16AQ96I34 528 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 LRIG1Q96JA1 1093 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 SERAC1Q96JX3 654 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 CSPG4P5Q96PW8 444 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 SCNM1Q9BWG6 230 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 PCDH18Q9HCL0 1135 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 PREBQ9HCU5 417 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 LHX3Q9UBR4 397 aa15.26■□□□□ 0.03
VPS39-210ENST00000568357 UBA2Q9UBT2 640 aaPredicted RBP15.26■□□□□ 0.03
VPS39-210ENST00000568357 FNDC3AQ9Y2H6 1198 aaKnown RBP15.26■□□□□ 0.03
VPS39-210ENST00000568357 GCN1Q92616 2671 aaKnown RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms