RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 MKRN2Q9H000 416 aaKnown RBP21.5■■□□□ 1.03
VPS29-206ENST00000549578 POLMQ9NP87 494 aaPredicted RBP21.5■■□□□ 1.03
VPS29-206ENST00000549578 GPR37L1O60883 481 aa21.49■■□□□ 1.03
VPS29-206ENST00000549578 HSPA9P38646 679 aaKnown RBP21.49■■□□□ 1.03
VPS29-206ENST00000549578 SCNN1BP51168 640 aa21.49■■□□□ 1.03
VPS29-206ENST00000549578 CCR3P51677 355 aa21.49■■□□□ 1.03
VPS29-206ENST00000549578 CYP1B1Q16678 543 aa21.49■■□□□ 1.03
VPS29-206ENST00000549578 MYLK3Q32MK0 819 aa21.49■■□□□ 1.03
VPS29-206ENST00000549578 TTC27Q6P3X3 843 aa21.49■■□□□ 1.03
VPS29-206ENST00000549578 PLPP6Q8IY26 295 aa21.49■■□□□ 1.03
VPS29-206ENST00000549578 DTWD2Q8NBA8 298 aa21.49■■□□□ 1.03
VPS29-206ENST00000549578 TSTD1Q8NFU3 115 aa21.49■■□□□ 1.03
VPS29-206ENST00000549578 FERMT1Q9BQL6 677 aa21.49■■□□□ 1.03
VPS29-206ENST00000549578 POLR1EQ9GZS1 481 aaKnown RBP21.49■■□□□ 1.03
VPS29-206ENST00000549578 ZDHHC6Q9H6R6 413 aa21.49■■□□□ 1.03
VPS29-206ENST00000549578 KLHL8Q9P2G9 620 aaPredicted RBP21.49■■□□□ 1.03
VPS29-206ENST00000549578 AMACRQ9UHK6 382 aa21.49■■□□□ 1.03
VPS29-206ENST00000549578 ATP8A1Q9Y2Q0 1164 aa21.49■■□□□ 1.03
VPS29-206ENST00000549578 FARP1Q9Y4F1 1045 aaPredicted RBP21.49■■□□□ 1.03
VPS29-206ENST00000549578 CFAP69A5D8W1 941 aa21.48■■□□□ 1.03
VPS29-206ENST00000549578 PRR33A8MZF0 331 aa21.48■■□□□ 1.03
VPS29-206ENST00000549578 ZBTB24O43167 697 aaPredicted RBP21.48■■□□□ 1.03
VPS29-206ENST00000549578 ITGAVP06756 1048 aa21.48■■□□□ 1.03
VPS29-206ENST00000549578 CTSLP07711 333 aa21.48■■□□□ 1.03
VPS29-206ENST00000549578 CR2P20023 1033 aa21.48■■□□□ 1.03
VPS29-206ENST00000549578 CHRNA3P32297 505 aa21.48■■□□□ 1.03
VPS29-206ENST00000549578 DSC2Q02487 901 aa21.48■■□□□ 1.03
VPS29-206ENST00000549578 NSUN2Q08J23 767 aaKnown RBP eCLIP21.48■■□□□ 1.03
VPS29-206ENST00000549578 KCTD19Q17RG1 926 aaPredicted RBP21.48■■□□□ 1.03
VPS29-206ENST00000549578 TMEM31Q5JXX7 168 aa21.48■■□□□ 1.03
VPS29-206ENST00000549578 ANO7Q6IWH7 933 aa21.48■■□□□ 1.03
VPS29-206ENST00000549578 SRLQ86TD4 932 aa21.48■■□□□ 1.03
VPS29-206ENST00000549578 MMAAQ8IVH4 418 aaKnown RBP21.48■■□□□ 1.03
VPS29-206ENST00000549578 C12orf50Q8NA57 414 aaPredicted RBP21.48■■□□□ 1.03
VPS29-206ENST00000549578 CCDC110Q8TBZ0 833 aa21.48■■□□□ 1.03
VPS29-206ENST00000549578 HMGB4Q8WW32 186 aa21.48■■□□□ 1.03
VPS29-206ENST00000549578 VOPP1Q96AW1 172 aa21.48■■□□□ 1.03
VPS29-206ENST00000549578 TEKT5Q96M29 485 aa21.48■■□□□ 1.03
VPS29-206ENST00000549578 NSMCE3Q96MG7 304 aa21.48■■□□□ 1.03
VPS29-206ENST00000549578 SEMA3CQ99985 751 aa21.48■■□□□ 1.03
VPS29-206ENST00000549578 HEPHQ9BQS7 1158 aa21.48■■□□□ 1.03
VPS29-206ENST00000549578 RSPH9Q9H1X1 276 aaPredicted RBP21.48■■□□□ 1.03
VPS29-206ENST00000549578 CDC23Q9UJX2 597 aa21.48■■□□□ 1.03
VPS29-206ENST00000549578 WASF2Q9Y6W5 498 aa21.48■■□□□ 1.03
VPS29-206ENST00000549578 CACNA1IQ9P0X4 2223 aa21.47■■□□□ 1.03
VPS29-206ENST00000549578 PHF2O75151 1096 aa21.47■■□□□ 1.03
VPS29-206ENST00000549578 STK10O94804 968 aaKnown RBP21.47■■□□□ 1.03
VPS29-206ENST00000549578 GABRG2P18507 467 aa21.47■■□□□ 1.03
VPS29-206ENST00000549578 NDUFV2P19404 249 aa21.47■■□□□ 1.03
VPS29-206ENST00000549578 ARSIQ5FYB1 569 aa21.47■■□□□ 1.03
VPS29-206ENST00000549578 MAMSTRQ6ZN01 415 aa21.47■■□□□ 1.03
VPS29-206ENST00000549578 PID1Q7Z2X4 250 aa21.47■■□□□ 1.03
VPS29-206ENST00000549578 TMPRSS6Q8IU80 811 aa21.47■■□□□ 1.03
VPS29-206ENST00000549578 MRGPRX1Q96LB2 322 aa21.47■■□□□ 1.03
VPS29-206ENST00000549578 NUDCD1Q96RS6 583 aa21.47■■□□□ 1.03
VPS29-206ENST00000549578 VAT1Q99536 393 aa21.47■■□□□ 1.03
VPS29-206ENST00000549578 NOD2Q9HC29 1040 aa21.47■■□□□ 1.03
VPS29-206ENST00000549578 SCUBE2Q9NQ36 999 aa21.47■■□□□ 1.03
VPS29-206ENST00000549578 HAUS2Q9NVX0 235 aa21.47■■□□□ 1.03
VPS29-206ENST00000549578 IL36AQ9UHA7 158 aa21.47■■□□□ 1.03
VPS29-206ENST00000549578 SARDHQ9UL12 918 aa21.47■■□□□ 1.03
VPS29-206ENST00000549578 DRG1Q9Y295 367 aaKnown RBP21.47■■□□□ 1.03
VPS29-206ENST00000549578 F5H423 210 aaPredicted RBP21.46■■□□□ 1.03
VPS29-206ENST00000549578 K7ESF4 209 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 ALOX15BO15296 676 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 LEFTY1O75610 366 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 POP4O95707 220 aaKnown RBP21.46■■□□□ 1.03
VPS29-206ENST00000549578 IL1BP01584 269 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 CD68P34810 354 aaPredicted RBP21.46■■□□□ 1.03
VPS29-206ENST00000549578 PSMD8P48556 350 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 CSNK1DP48730 415 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 PXNP49023 591 aaPredicted RBP21.46■■□□□ 1.03
VPS29-206ENST00000549578 RPS14P62263 151 aaKnown RBP21.46■■□□□ 1.03
VPS29-206ENST00000549578 NIPAL4Q0D2K0 466 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 POM121L1PQ3SYA9 428 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 ANKRD20A2Q5SQ80 823 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 ANKRD20A1Q5TYW2 823 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 ANKRD20A3Q5VUR7 823 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 ZNF776Q68DI1 518 aaPredicted RBP21.46■■□□□ 1.03
VPS29-206ENST00000549578 ALG1LQ6GMV1 187 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 TSSK4Q6SA08 328 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 PRUNE1Q86TP1 453 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 C1orf210Q8IVY1 113 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 KMT2EQ8IZD2 1858 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 MDGA1Q8NFP4 955 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 ARRDC2Q8TBH0 407 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 C1QTNF1Q9BXJ1 281 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 DDX47Q9H0S4 455 aaKnown RBP21.46■■□□□ 1.03
VPS29-206ENST00000549578 FBRSQ9HAH7 460 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 GLOD4Q9HC38 313 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 BCCIPQ9P287 314 aaKnown RBP eCLIP21.46■■□□□ 1.03
VPS29-206ENST00000549578 PPM1HQ9ULR3 514 aa21.46■■□□□ 1.03
VPS29-206ENST00000549578 LAMTOR5O43504 91 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 RNASEH1O60930 286 aaKnown RBP21.45■■□□□ 1.02
VPS29-206ENST00000549578 ZNF189O75820 626 aaPredicted RBP21.45■■□□□ 1.02
VPS29-206ENST00000549578 PAPSS2O95340 614 aaPredicted RBP21.45■■□□□ 1.02
VPS29-206ENST00000549578 PIGNO95427 931 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 APBB3O95704 486 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 IFNB1P01574 187 aa21.45■■□□□ 1.02
VPS29-206ENST00000549578 NFKB1P19838 968 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms