RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 PRR20BP86481 221 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 PRR20AP86496 221 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 CYP24A1Q07973 514 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 SGCGQ13326 291 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 MRPL49Q13405 166 aaKnown RBP4.89□□□□□ -1.63
LIMS1-214ENST00000542845 PSMD6Q15008 389 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 ZNF284Q2VY69 593 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 TPRG1LQ5T0D9 272 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 SPOPLQ6IQ16 392 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 Q6ZVU0 165 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 SV2BQ7L1I2 683 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 RD3Q7Z3Z2 195 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 TP53INP2Q8IXH6 220 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 NRSN1Q8IZ57 195 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 UNC5BQ8IZJ1 945 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 TMEM145Q8NBT3 493 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 HJURPQ8NCD3 748 aaPredicted RBP4.89□□□□□ -1.63
LIMS1-214ENST00000542845 RCBTB1Q8NDN9 531 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 BTN2A2Q8WVV5 523 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 MYEOVQ96EZ4 313 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 AK8Q96MA6 479 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 CATSPER2Q96P56 530 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 TWNKQ96RR1 684 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 INSM2Q96T92 566 aaPredicted RBP4.89□□□□□ -1.63
LIMS1-214ENST00000542845 BOCQ9BWV1 1114 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 DUSP16Q9BY84 665 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 SLC17A9Q9BYT1 436 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 ULBP1Q9BZM6 244 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 SLC13A1Q9BZW2 595 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 UNKQ9C0B0 810 aaKnown RBP4.89□□□□□ -1.63
LIMS1-214ENST00000542845 SEMA6CQ9H3T2 930 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 C12orf49Q9H741 205 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 OLA1Q9NTK5 396 aaKnown RBP4.89□□□□□ -1.63
LIMS1-214ENST00000542845 CUEDC1Q9NWM3 386 aaPredicted RBP4.89□□□□□ -1.63
LIMS1-214ENST00000542845 AKAP7Q9P0M2 348 aaPredicted RBP4.89□□□□□ -1.63
LIMS1-214ENST00000542845 DKK3Q9UBP4 350 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 KCND3Q9UK17 655 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 ZFR2Q9UPR6 939 aaKnown RBP4.89□□□□□ -1.63
LIMS1-214ENST00000542845 HBS1LQ9Y450 684 aaKnown RBP4.89□□□□□ -1.63
LIMS1-214ENST00000542845 HRH3Q9Y5N1 445 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 HS3ST3A1Q9Y663 406 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 RNF215Q9Y6U7 377 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 ITPR3Q14573 2671 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 TLN1Q9Y490 2541 aaKnown RBP4.88□□□□□ -1.63
LIMS1-214ENST00000542845 UNC13CQ8NB66 2214 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 MKRN2OSH3BPM6 223 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 M0QYT0 321 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 PIK3R2O00459 728 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 FPGTO14772 594 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 RAD51BO15315 384 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 SPINT1O43278 529 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 WIPF1O43516 503 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 ACSL4O60488 711 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 VNN1O95497 513 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 ZBED1O96006 694 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 MOCS2O96007 188 aaPredicted RBP4.88□□□□□ -1.63
LIMS1-214ENST00000542845 CELA2BP08218 269 aaPredicted RBP4.88□□□□□ -1.63
LIMS1-214ENST00000542845 CTSEP14091 401 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 TIMP2P16035 220 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 PDGFRAP16234 1089 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 TSHRP16473 764 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 CD82P27701 267 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 OAS2P29728 719 aaKnown RBP4.88□□□□□ -1.63
LIMS1-214ENST00000542845 CCKBRP32239 447 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 UGT1A3P35503 534 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 RABIFP47224 123 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 PPM1FP49593 454 aaPredicted RBP4.88□□□□□ -1.63
LIMS1-214ENST00000542845 TBX4P57082 545 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 CDC20Q12834 499 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 EIF2B5Q13144 721 aaKnown RBP4.88□□□□□ -1.63
LIMS1-214ENST00000542845 ARHGEF7Q14155 803 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 PTK2BQ14289 1009 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 C16orf72Q14CZ0 275 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 DLG2Q15700 870 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 SGSM1Q2NKQ1 1148 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 AMZ1Q400G9 498 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 DCAF6Q58WW2 860 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 FAM133BQ5BKY9 247 aaKnown RBP4.88□□□□□ -1.63
LIMS1-214ENST00000542845 RILPL1Q5EBL4 403 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 RRAGBQ5VZM2 374 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 BSPRYQ5W0U4 402 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 ARL6IP4Q66PJ3 421 aaKnown RBP4.88□□□□□ -1.63
LIMS1-214ENST00000542845 KDELC2Q7Z4H8 507 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 ABI3BPQ7Z7G0 1075 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 UNC93AQ86WB7 457 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 CCNJLQ8IV13 435 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 NELFCDQ8IXH7 590 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 PHACTR4Q8IZ21 702 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 LGI2Q8N0V4 545 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 ZNF557Q8N988 423 aaPredicted RBP4.88□□□□□ -1.63
LIMS1-214ENST00000542845 KDM1BQ8NB78 822 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 KYQ8NBH2 561 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 PMEPA1Q969W9 287 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 KIAA1143Q96AT1 154 aaPredicted RBP4.88□□□□□ -1.63
LIMS1-214ENST00000542845 DNAJC19Q96DA6 116 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 RNF31Q96EP0 1072 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 EPSTI1Q96J88 318 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 LMLNQ96KR4 655 aa4.88□□□□□ -1.63
LIMS1-214ENST00000542845 IPO9Q96P70 1041 aaKnown RBP4.88□□□□□ -1.63
LIMS1-214ENST00000542845 DDX50Q9BQ39 737 aaKnown RBP4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms