RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 POLR1EQ9GZS1 481 aaKnown RBP17.37■□□□□ 0.37
LIG1-204ENST00000542460 RSPH9Q9H1X1 276 aaPredicted RBP17.37■□□□□ 0.37
LIG1-204ENST00000542460 ZNF148Q9UQR1 794 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 DRG1Q9Y295 367 aaKnown RBP17.37■□□□□ 0.37
LIG1-204ENST00000542460 ATP8A1Q9Y2Q0 1164 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 TCRBV21S2A2A0A5A6 115 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 RNF103O00237 685 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 ZNF500O60304 480 aaPredicted RBP17.37■□□□□ 0.37
LIG1-204ENST00000542460 ALDH1A2O94788 518 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 HLA-DQB2P05538 268 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 ITGAVP06756 1048 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 CES1P23141 567 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 SCNN1BP51168 640 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 COPAP53621 1224 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 RAD51Q06609 339 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 ITKQ08881 620 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 RALGPS1Q5JS13 557 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 C1orf210Q8IVY1 113 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 CNTD1Q8N815 330 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 TEKT5Q96M29 485 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 AGAP3Q96P47 875 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 TMEM121Q9BTD3 319 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 CEP41Q9BYV8 373 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 MKRN2Q9H000 416 aaKnown RBP17.37■□□□□ 0.37
LIG1-204ENST00000542460 TRHDEQ9UKU6 1024 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 LAMTOR5O43504 91 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 URI1O94763 535 aaPredicted RBP17.36■□□□□ 0.37
LIG1-204ENST00000542460 CR2P20023 1033 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 CHRNA3P32297 505 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 MAPK8P45983 427 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 RGRP47804 291 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 MAXP61244 160 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 GRM3Q14832 879 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 CYP1B1Q16678 543 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 ALG1LQ6GMV1 187 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 SRLQ86TD4 932 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 TMPRSS6Q8IU80 811 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 FAM71DQ8N9W8 422 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 C12orf50Q8NA57 414 aaPredicted RBP17.36■□□□□ 0.37
LIG1-204ENST00000542460 CHST14Q8NCH0 376 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 TMIEQ8NEW7 156 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 MAGOHBQ96A72 148 aaKnown RBP17.36■□□□□ 0.37
LIG1-204ENST00000542460 LRIG1Q96JA1 1093 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 NUDCD1Q96RS6 583 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 KLHL8Q9P2G9 620 aaPredicted RBP17.36■□□□□ 0.37
LIG1-204ENST00000542460 IL36AQ9UHA7 158 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 EVLQ9UI08 416 aaPredicted RBP17.36■□□□□ 0.37
LIG1-204ENST00000542460 CDC23Q9UJX2 597 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 PPM1HQ9ULR3 514 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 TTLL3Q9Y4R7 772 aa17.36■□□□□ 0.37
LIG1-204ENST00000542460 C5orf60A6NFR6 353 aa17.35■□□□□ 0.37
LIG1-204ENST00000542460 APBB3O95704 486 aa17.35■□□□□ 0.37
LIG1-204ENST00000542460 PRNPP04156 253 aa17.35■□□□□ 0.37
LIG1-204ENST00000542460 C7P10643 843 aa17.35■□□□□ 0.37
LIG1-204ENST00000542460 AP1S1P61966 158 aa17.35■□□□□ 0.37
LIG1-204ENST00000542460 TUBB2AQ13885 445 aa17.35■□□□□ 0.37
LIG1-204ENST00000542460 ZNF776Q68DI1 518 aaPredicted RBP17.35■□□□□ 0.37
LIG1-204ENST00000542460 PID1Q7Z2X4 250 aa17.35■□□□□ 0.37
LIG1-204ENST00000542460 ZNF567Q8N184 647 aa17.35■□□□□ 0.37
LIG1-204ENST00000542460 OR6K2Q8NGY2 324 aa17.35■□□□□ 0.37
LIG1-204ENST00000542460 MRGPRX1Q96LB2 322 aa17.35■□□□□ 0.37
LIG1-204ENST00000542460 HHIPQ96QV1 700 aa17.35■□□□□ 0.37
LIG1-204ENST00000542460 TUBB2BQ9BVA1 445 aa17.35■□□□□ 0.37
LIG1-204ENST00000542460 CPEB1Q9BZB8 566 aaKnown RBP17.35■□□□□ 0.37
LIG1-204ENST00000542460 ZDHHC6Q9H6R6 413 aa17.35■□□□□ 0.37
LIG1-204ENST00000542460 SCUBE2Q9NQ36 999 aa17.35■□□□□ 0.37
LIG1-204ENST00000542460 WASF2Q9Y6W5 498 aa17.35■□□□□ 0.37
LIG1-204ENST00000542460 MYO18AQ92614 2054 aaKnown RBP17.34■□□□□ 0.37
LIG1-204ENST00000542460 K7ESF4 209 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 PDE2AO00408 941 aaPredicted RBP17.34■□□□□ 0.37
LIG1-204ENST00000542460 INSIG1O15503 277 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 PHF2O75151 1096 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 IL1BP01584 269 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 GABRG2P18507 467 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 LMNB2Q03252 620 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 ZBTB16Q05516 673 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 ARSIQ5FYB1 569 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 ANKRD20A2Q5SQ80 823 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 ANKRD20A1Q5TYW2 823 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 ANKRD20A3Q5VUR7 823 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 FAM46CQ5VWP2 391 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 ANO7Q6IWH7 933 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 MMAAQ8IVH4 418 aaKnown RBP17.34■□□□□ 0.37
LIG1-204ENST00000542460 ATL2Q8NHH9 583 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 GRIN3AQ8TCU5 1115 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 HMGB4Q8WW32 186 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 PRCCQ92733 491 aaPredicted RBP17.34■□□□□ 0.37
LIG1-204ENST00000542460 RTP4Q96DX8 246 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 SIPA1Q96FS4 1042 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 TUBGCP5Q96RT8 1024 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 SEMA3CQ99985 751 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 PRMT8Q9NR22 394 aaPredicted RBP17.34■□□□□ 0.37
LIG1-204ENST00000542460 BCCIPQ9P287 314 aaKnown RBP eCLIP17.34■□□□□ 0.37
LIG1-204ENST00000542460 EBF1Q9UH73 591 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 FEZ2Q9UHY8 353 aaPredicted RBP17.34■□□□□ 0.37
LIG1-204ENST00000542460 ATG2BQ96BY7 2078 aa17.34■□□□□ 0.37
LIG1-204ENST00000542460 ZNF318Q5VUA4 2279 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.33■□□□□ 0.37
LIG1-204ENST00000542460 C1QTNF3-AMACRE9PGA6 284 aa17.33■□□□□ 0.37
LIG1-204ENST00000542460 OPHN1O60890 802 aa17.33■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms