RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 NEK5Q6P3R8 708 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 IL27RAQ6UWB1 636 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 LAYNQ6UX15 382 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 TBC1D3Q8IZP1 549 aaPredicted RBP14.43□□□□□ -0.1
USP28-209ENST00000540925 CHP1Q99653 195 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 UVRAGQ9P2Y5 699 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 LHX3Q9UBR4 397 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 DMTF1Q9Y222 760 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 FNDC3AQ9Y2H6 1198 aaKnown RBP14.43□□□□□ -0.1
USP28-209ENST00000540925 SNX11Q9Y5W9 270 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 DOCK9Q9BZ29 2069 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 J3KR12 359 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 SPINT1O43278 529 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 BUB1O43683 1085 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 AP1G1O43747 822 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 CBFA2T3O75081 653 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 POP4O95707 220 aaKnown RBP14.42□□□□□ -0.1
USP28-209ENST00000540925 CER1O95813 267 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 TMEM253P0C7T8 217 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 ADRB3P13945 408 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 IL4RP24394 825 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 GKP32189 559 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 PAPOLAP51003 745 aaKnown RBP14.42□□□□□ -0.1
USP28-209ENST00000540925 NOVA1P51513 510 aaKnown RBP14.42□□□□□ -0.1
USP28-209ENST00000540925 ARSEP51690 589 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 TEAD4Q15561 434 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 SMTNL2Q2TAL5 461 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 ZNF284Q2VY69 593 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 MYLK3Q32MK0 819 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 TMEM259Q4ZIN3 620 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 PPP6R3Q5H9R7 873 aaPredicted RBP14.42□□□□□ -0.1
USP28-209ENST00000540925 ATXN7L2Q5T6C5 722 aaPredicted RBP14.42□□□□□ -0.1
USP28-209ENST00000540925 NAPEPLDQ6IQ20 393 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 PSAPL1Q6NUJ1 521 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 PARS2Q7L3T8 475 aaKnown RBP14.42□□□□□ -0.1
USP28-209ENST00000540925 CPNE8Q86YQ8 564 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 TP53INP2Q8IXH6 220 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 DEFB124Q8NES8 71 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 OR6K2Q8NGY2 324 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 ZNF564Q8TBZ8 553 aaPredicted RBP14.42□□□□□ -0.1
USP28-209ENST00000540925 PPP1R16AQ96I34 528 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 CELF6Q96J87 481 aaKnown RBP14.42□□□□□ -0.1
USP28-209ENST00000540925 CSPG4P5Q96PW8 444 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 GAREM1Q9H706 876 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.42□□□□□ -0.1
USP28-209ENST00000540925 ETNK2Q9NVF9 386 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 ZFR2Q9UPR6 939 aaKnown RBP14.42□□□□□ -0.1
USP28-209ENST00000540925 WASF3Q9UPY6 502 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 PCDHGB2Q9Y5G2 931 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 FADS3Q9Y5Q0 445 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 FRYQ5TBA9 3013 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 WDFY3Q8IZQ1 3526 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 TMEM131Q92545 1883 aa14.42□□□□□ -0.1
USP28-209ENST00000540925 MYO1FO00160 1098 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 RNGTTO60942 597 aaKnown RBP14.41□□□□□ -0.1
USP28-209ENST00000540925 PROSCO94903 275 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 H2AFZP0C0S5 128 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 CD38P28907 300 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 PMLP29590 882 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 DNA2P51530 1060 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 NEK3P51956 506 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 SNRPD1P62314 119 aaKnown RBP14.41□□□□□ -0.1
USP28-209ENST00000540925 CCDC15Q0P6D6 951 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 ZNF805Q5CZA5 627 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 H2AFVQ71UI9 128 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 HORMAD1Q86X24 394 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 CNGA4Q8IV77 575 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 LZTR1Q8N653 840 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 TC2NQ8N9U0 490 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 TMEM145Q8NBT3 493 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 NETO2Q8NC67 525 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 SERAC1Q96JX3 654 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 GDAP1L1Q96MZ0 367 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 OSBPL1AQ9BXW6 950 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 CPEB1Q9BZB8 566 aaKnown RBP14.41□□□□□ -0.1
USP28-209ENST00000540925 RBSNQ9H1K0 784 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 ZDHHC6Q9H6R6 413 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 ZWILCHQ9H900 591 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 NHEJ1Q9H9Q4 299 aaPredicted RBP14.41□□□□□ -0.1
USP28-209ENST00000540925 PCDH18Q9HCL0 1135 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 TP53BP1Q12888 1972 aaPredicted RBP14.41□□□□□ -0.1
USP28-209ENST00000540925 CABIN1Q9Y6J0 2220 aa14.41□□□□□ -0.1
USP28-209ENST00000540925 A0A1W2PQU0 124 aa14.4□□□□□ -0.1
USP28-209ENST00000540925 ARHGAP42A6NI28 874 aa14.4□□□□□ -0.1
USP28-209ENST00000540925 C16orf96A6NNT2 1141 aa14.4□□□□□ -0.1
USP28-209ENST00000540925 H3BRJ5 948 aa14.4□□□□□ -0.1
USP28-209ENST00000540925 AREL1O15033 823 aa14.4□□□□□ -0.1
USP28-209ENST00000540925 MTA2O94776 668 aa14.4□□□□□ -0.1
USP28-209ENST00000540925 PEX11BO96011 259 aa14.4□□□□□ -0.1
USP28-209ENST00000540925 MAN1A1P33908 653 aa14.4□□□□□ -0.1
USP28-209ENST00000540925 ABL2P42684 1182 aa14.4□□□□□ -0.1
USP28-209ENST00000540925 FAM193AP78312 1265 aa14.4□□□□□ -0.1
USP28-209ENST00000540925 TCEAL1Q15170 157 aa14.4□□□□□ -0.1
USP28-209ENST00000540925 SETMARQ53H47 684 aaPredicted RBP14.4□□□□□ -0.1
USP28-209ENST00000540925 ARHGAP36Q6ZRI8 547 aa14.4□□□□□ -0.1
USP28-209ENST00000540925 PRPF39Q86UA1 669 aaKnown RBP14.4□□□□□ -0.1
USP28-209ENST00000540925 IQCHQ86VS3 1027 aa14.4□□□□□ -0.1
USP28-209ENST00000540925 MFSD2AQ8NA29 543 aa14.4□□□□□ -0.1
USP28-209ENST00000540925 BAHD1Q8TBE0 780 aaPredicted RBP14.4□□□□□ -0.1
USP28-209ENST00000540925 CTNNBL1Q8WYA6 563 aaPredicted RBP14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms