RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 SCML4Q8N228 414 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 PHTF2Q8N3S3 785 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 PSMA8Q8TAA3 256 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 POMGNT1Q8WZA1 660 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 VTI1AQ96AJ9 217 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 E2F7Q96AV8 911 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 ST6GAL2Q96JF0 529 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 SERAC1Q96JX3 654 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 SENP7Q9BQF6 1050 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 SEC22CQ9BRL7 303 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 HERPUD2Q9BSE4 406 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 GPR88Q9GZN0 384 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 C2orf40Q9H1Z8 148 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 EPS8L2Q9H6S3 715 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 CD93Q9NPY3 652 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 MRPL40Q9NQ50 206 aaKnown RBP9.58□□□□□ -0.88
CLIP1-214ENST00000540539 FBXO8Q9NRD0 319 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 EMC3Q9P0I2 261 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 ACAD8Q9UKU7 415 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 PCOLCE2Q9UKZ9 415 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 MRPS7Q9Y2R9 242 aaKnown RBP9.58□□□□□ -0.88
CLIP1-214ENST00000540539 MYH9P35579 1960 aaKnown RBP9.57□□□□□ -0.88
CLIP1-214ENST00000540539 GTPBP10A4D1E9 387 aaKnown RBP9.57□□□□□ -0.88
CLIP1-214ENST00000540539 EML1O00423 815 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 GAS2O43903 313 aaKnown RBP9.57□□□□□ -0.88
CLIP1-214ENST00000540539 MT-ND3P03897 115 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 ITGB3P05106 788 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 PSKH1P11801 424 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 ITGALP20701 1170 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 IMPDH1P20839 514 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 CSTF2P33240 577 aaKnown RBP eCLIP9.57□□□□□ -0.88
CLIP1-214ENST00000540539 EIF2DP41214 584 aaKnown RBP9.57□□□□□ -0.88
CLIP1-214ENST00000540539 NT5C2P49902 561 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 S100A12P80511 92 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 SLC18A2Q05940 514 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 RUNX1T1Q06455 604 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 MTM1Q13496 603 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 RFTN1Q14699 578 aaPredicted RBP9.57□□□□□ -0.88
CLIP1-214ENST00000540539 DRAP1Q14919 205 aaPredicted RBP9.57□□□□□ -0.88
CLIP1-214ENST00000540539 ZMYND11Q15326 602 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 PLA2G4EQ3MJ16 856 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 TMEM65Q6PI78 240 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 CDHR3Q6ZTQ4 885 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 ERMP1Q7Z2K6 904 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 RIOX2Q8IUF8 465 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 WDR49Q8IV35 697 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 CELF2-AS1Q8N7Q2 184 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 MAGEB6Q8N7X4 407 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 IL17RDQ8NFM7 739 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 VANGL1Q8TAA9 524 aaPredicted RBP9.57□□□□□ -0.88
CLIP1-214ENST00000540539 FRS2Q8WU20 508 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 DCAKDQ8WVC6 231 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 LRTOMTQ8WZ04 291 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 ST8SIA2Q92186 375 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 NKD2Q969F2 451 aaPredicted RBP9.57□□□□□ -0.88
CLIP1-214ENST00000540539 ATP6V1E2Q96A05 226 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 GLTPQ9NZD2 209 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 CYB5R1Q9UHQ9 305 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 IPO11Q9UI26 975 aaKnown RBP9.57□□□□□ -0.88
CLIP1-214ENST00000540539 HDAC9Q9UKV0 1011 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 ZNRF3Q9ULT6 936 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 PRPF19Q9UMS4 504 aaKnown RBP9.57□□□□□ -0.88
CLIP1-214ENST00000540539 PMF1-BGLAPU3KQ54 211 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 ZNFX1Q9P2E3 1918 aaKnown RBP9.57□□□□□ -0.88
CLIP1-214ENST00000540539 CLUHO75153 1309 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 DICER1Q9UPY3 1922 aaKnown RBP9.57□□□□□ -0.88
CLIP1-214ENST00000540539 DENND3A2RUS2 1198 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 ISPDA4D126 451 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 USP17L3A6NCW0 530 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 USP17L4A6NCW7 530 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 PDZK1P1A8MUH7 402 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 DNALI1O14645 258 aaPredicted RBP9.57□□□□□ -0.88
CLIP1-214ENST00000540539 BANF1O75531 89 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 SERPINI2O75830 405 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 UPK1BO75841 260 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 VEGFAP15692 232 aaPredicted RBP9.57□□□□□ -0.88
CLIP1-214ENST00000540539 DDCP20711 480 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 ADD2P35612 726 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 STAT1P42224 750 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 SEPHS1P49903 392 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 PKNOX1P55347 436 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 ARPP19P56211 112 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 MYL6P60660 151 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 BFSP1Q12934 665 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 MTERF2Q49AM1 385 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 FBXO43Q4G163 708 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 PIGGQ5H8A4 983 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 STRIP1Q5VSL9 837 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 KIAA1324Q6UXG2 1013 aaKnown RBP9.57□□□□□ -0.88
CLIP1-214ENST00000540539 LINC00299Q6ZSB3 139 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 SPATC1Q76KD6 591 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 USP17L1Q7RTZ2 530 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 PM20D2Q8IYS1 436 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 RNF148Q8N7C7 305 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 ETNPPLQ8TBG4 499 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 TRPM4Q8TD43 1214 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 FAM118BQ9BPY3 351 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 TRAF4Q9BUZ4 470 aaPredicted RBP9.57□□□□□ -0.88
CLIP1-214ENST00000540539 APOL6Q9BWW8 343 aa9.57□□□□□ -0.88
CLIP1-214ENST00000540539 SLC6A17Q9H1V8 727 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms