RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 TPH1P17752 444 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 FASP25445 335 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 EFNA5P52803 228 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 ZYG11AQ6WRX3 759 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 CPSF7Q8N684 471 aaKnown RBP13□□□□□ -0.33
SFSWAP-209ENST00000540469 FAM149B1Q96BN6 582 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 DCPSQ96C86 337 aaKnown RBP13□□□□□ -0.33
SFSWAP-209ENST00000540469 P2RY11Q96G91 374 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 FCRL3Q96P31 734 aaPredicted RBP13□□□□□ -0.33
SFSWAP-209ENST00000540469 CSPG4P5Q96PW8 444 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 NEURL2Q9BR09 285 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 C1orf50Q9BV19 199 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 EIF2AQ9BY44 585 aaKnown RBP13□□□□□ -0.33
SFSWAP-209ENST00000540469 GNPTGQ9UJJ9 305 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 NFICP08651 508 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 PSMA4P25789 261 aaKnown RBP13□□□□□ -0.33
SFSWAP-209ENST00000540469 ARL2P36404 184 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 IREB2P48200 963 aaKnown RBP13□□□□□ -0.33
SFSWAP-209ENST00000540469 ZBTB17Q13105 803 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 NHSL2Q5HYW2 709 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 SNRNP48Q6IEG0 339 aaKnown RBP13□□□□□ -0.33
SFSWAP-209ENST00000540469 HMBOX1Q6NT76 420 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 FAM131BQ86XD5 332 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 DHRSXQ8N5I4 330 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 SCAIQ8N9R8 606 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 OR2T34Q8NGX1 318 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 OR2T3Q8NH03 318 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 HPS1Q92902 700 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 ADNPQ9H2P0 1102 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 TMEM134Q9H6X4 195 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 MTMR10Q9NXD2 777 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 GIN1Q9NXP7 522 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 CACNA2D2Q9NY47 1150 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 SEPT3Q9UH03 358 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 SIPA1L1O43166 1804 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 NRP1O14786 923 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 NR4A1P22736 598 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 NUMBP49757 651 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 SLC12A2P55011 1212 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 CREB5Q02930 508 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 ANO4Q32M45 955 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 Q3C1V9 767 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 IL31Q6EBC2 164 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 PPP4R4Q6NUP7 873 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 PYROXD2Q8N2H3 581 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 SHCBP1Q8NEM2 672 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 ZNF420Q8TAQ5 688 aaPredicted RBP13□□□□□ -0.33
SFSWAP-209ENST00000540469 MAGEE2Q8TD90 523 aaPredicted RBP13□□□□□ -0.33
SFSWAP-209ENST00000540469 TRIM15Q9C019 465 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 DUS2Q9NX74 493 aaKnown RBP13□□□□□ -0.33
SFSWAP-209ENST00000540469 ZNF70Q9UC06 446 aaPredicted RBP13□□□□□ -0.33
SFSWAP-209ENST00000540469 IPO11Q9UI26 975 aaKnown RBP13□□□□□ -0.33
SFSWAP-209ENST00000540469 PTBP2Q9UKA9 531 aaKnown RBP13□□□□□ -0.33
SFSWAP-209ENST00000540469 CPSF3Q9UKF6 684 aaKnown RBP13□□□□□ -0.33
SFSWAP-209ENST00000540469 RIPK3Q9Y572 518 aa13□□□□□ -0.33
SFSWAP-209ENST00000540469 ZNF701M0R085 212 aaPredicted RBP12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 CILPO75339 1184 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 SNRPB2P08579 225 aaKnown RBP12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 HSPA1AP0DMV8 641 aaKnown RBP12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 HSPA1BP0DMV9 641 aaKnown RBP12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 ARSAP15289 507 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 PROZP22891 400 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 BAG6P46379 1132 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 DMPKQ09013 629 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 GRM3Q14832 879 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 SPPL2CQ8IUH8 684 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 ACVR1CQ8NER5 493 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 ATG4CQ96DT6 458 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 NACA2Q9H009 215 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 SOX17Q9H6I2 414 aaPredicted RBP12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 UTP6Q9NYH9 597 aaKnown RBP12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 MAP3K20Q9NYL2 800 aaKnown RBP12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 NCKIPSDQ9NZQ3 722 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 FAM32AQ9Y421 112 aaKnown RBP12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 DHRS12A0PJE2 317 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 MDM4O15151 490 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 GMNNO75496 209 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 LCP1P13796 627 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 FSTL5Q8N475 847 aaPredicted RBP12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 CXorf38Q8TB03 319 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 SLCO4A1Q96BD0 722 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 HPDLQ96IR7 371 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 PPP1R16BQ96T49 567 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 C9orf16Q9BUW7 83 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 GMPR2Q9P2T1 348 aaKnown RBP12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 OAZ3Q9UMX2 235 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 ATP6AP2A0A1C7CYW4 349 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 MFSD11O43934 449 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 ATP6AP2O75787 350 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 CSE1LP55060 971 aaKnown RBP12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 SLC6A3Q01959 620 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 ZNF460Q14592 562 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 TREML2Q5T2D2 321 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 ATF7IP2Q5U623 682 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 ANKRD26P1Q6NSI1 321 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 PMF1Q6P1K2 205 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 ERMP1Q7Z2K6 904 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 ZNF354CQ86Y25 554 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 FAM110BQ8TC76 370 aa12.99□□□□□ -0.33
SFSWAP-209ENST00000540469 CHPT1Q8WUD6 406 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms