RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 DSC3Q14574 896 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 CTF1Q16619 201 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 SAMD4BQ5PRF9 694 aaKnown RBP12.57□□□□□ -0.4
USP3-203ENST00000538686 N4BP2L1Q5TBK1 243 aaPredicted RBP12.57□□□□□ -0.4
USP3-203ENST00000538686 MFSD7Q6UXD7 560 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 WDR49Q8IV35 697 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 IGDCC3Q8IVU1 814 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 UNC5BQ8IZJ1 945 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 DEPDC4Q8N2C3 294 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 IL17RDQ8NFM7 739 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 OR2T34Q8NGX1 318 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 OR2T3Q8NH03 318 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 SEPT1Q8WYJ6 367 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 LPGAT1Q92604 370 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 MUL1Q969V5 352 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 CENPNQ96H22 339 aaPredicted RBP12.57□□□□□ -0.4
USP3-203ENST00000538686 TMEM47Q9BQJ4 181 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 KIFC3Q9BVG8 833 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 TEX13BQ9BXU2 312 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 ZNF385DQ9H6B1 395 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 JMJD4Q9H9V9 463 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 RAVER2Q9HCJ3 691 aaKnown RBP12.57□□□□□ -0.4
USP3-203ENST00000538686 ZBTB26Q9HCK0 441 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 ACOXLQ9NUZ1 547 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 COL24A1Q17RW2 1714 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 ZNFX1Q9P2E3 1918 aaKnown RBP12.57□□□□□ -0.4
USP3-203ENST00000538686 GOLGA8JA6NMD2 632 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 TRIM24O15164 1050 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 CHADO15335 359 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 NDUFA2O43678 99 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 TIPRLO75663 272 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 SLITRK5O94991 958 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 HSPA4LO95757 839 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 IL10P22301 178 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 FASP25445 335 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 ATICP31939 592 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 POLR2IP36954 125 aaKnown RBP12.57□□□□□ -0.4
USP3-203ENST00000538686 TALDO1P37837 337 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 HTR3AP46098 478 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 INPP5AQ14642 412 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 CHRNA2Q15822 529 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 SLC9B1Q4ZJI4 515 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 RBM20Q5T481 1227 aaKnown RBP12.57□□□□□ -0.4
USP3-203ENST00000538686 SHEQ5VZ18 495 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 TRAF7Q6Q0C0 670 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 ENOSF1Q7L5Y1 443 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 LGI2Q8N0V4 545 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 LRRC20Q8TCA0 184 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 PMEPA1Q969W9 287 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 FBXL20Q96IG2 436 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 KREMEN1Q96MU8 473 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 IDI2Q9BXS1 227 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 CCSER2Q9H7U1 834 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 ABCB10Q9NRK6 738 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 CCM2LQ9NUG4 571 aaPredicted RBP12.57□□□□□ -0.4
USP3-203ENST00000538686 PAK1IP1Q9NWT1 392 aaPredicted RBP12.57□□□□□ -0.4
USP3-203ENST00000538686 SARDHQ9UL12 918 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 BAG5Q9UL15 447 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 LOC102724428A0A0B4J2F2 783 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 AQP12BA6NM10 295 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 SLCO1B7G3V0H7 640 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 INO80B-WBP1J3KQ70 363 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 TOP3BO95985 862 aaKnown RBP12.56□□□□□ -0.4
USP3-203ENST00000538686 ALBP02768 609 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 NDST1P52848 882 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 SIK1P57059 783 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 ENPEPQ07075 957 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 COX10Q12887 443 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 STX5Q13190 355 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 POLD3Q15054 466 aaPredicted RBP12.56□□□□□ -0.4
USP3-203ENST00000538686 PXDC1Q5TGL8 231 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 MOXD1Q6UVY6 613 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 BBS12Q6ZW61 710 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 DHFR2Q86XF0 187 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 BRSK2Q8IWQ3 736 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 AQP12AQ8IXF9 295 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 MYCT1Q8N699 235 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 PSD4Q8NDX1 1056 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 OR13J1Q8NGT2 312 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 URGCPQ8TCY9 931 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 PIGSQ96S52 555 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 CPXM1Q96SM3 734 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 LPIN3Q9BQK8 851 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 DSN1Q9H410 356 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 RIOX1Q9H6W3 641 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 TIGARQ9NQ88 270 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 AGPAT4Q9NRZ5 378 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 TBC1D22BQ9NU19 505 aa12.56□□□□□ -0.4
USP3-203ENST00000538686 PAQR5Q9NXK6 330 aaPredicted RBP12.56□□□□□ -0.4
USP3-203ENST00000538686 ZC3H7BQ9UGR2 993 aaKnown RBP12.56□□□□□ -0.4
USP3-203ENST00000538686 ATP6V1G2-DDX39BF2Z307 99 aa12.55□□□□□ -0.4
USP3-203ENST00000538686 PLK4O00444 970 aa12.55□□□□□ -0.4
USP3-203ENST00000538686 ARHGEF9O43307 516 aa12.55□□□□□ -0.4
USP3-203ENST00000538686 CCNE2O96020 404 aa12.55□□□□□ -0.4
USP3-203ENST00000538686 RAP1GAPP47736 663 aa12.55□□□□□ -0.4
USP3-203ENST00000538686 CLK2P49760 499 aaKnown RBP12.55□□□□□ -0.4
USP3-203ENST00000538686 OR2B6P58173 313 aa12.55□□□□□ -0.4
USP3-203ENST00000538686 POU6F2P78424 691 aaPredicted RBP12.55□□□□□ -0.4
USP3-203ENST00000538686 SLC10A2Q12908 348 aaPredicted RBP12.55□□□□□ -0.4
USP3-203ENST00000538686 BMPR2Q13873 1038 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms