RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 SLC32A1Q9H598 525 aa25.08■■□□□ 1.61
UPF3A-209ENST00000492270 PDFQ9HBH1 243 aa25.08■■□□□ 1.61
UPF3A-209ENST00000492270 TM7SF3Q9NS93 570 aa25.08■■□□□ 1.61
UPF3A-209ENST00000492270 IP6K2Q9UHH9 426 aa25.08■■□□□ 1.61
UPF3A-209ENST00000492270 MFHAS1Q9Y4C4 1052 aa25.08■■□□□ 1.61
UPF3A-209ENST00000492270 LRRK1Q38SD2 2015 aa25.08■■□□□ 1.61
UPF3A-209ENST00000492270 VILLO15195 856 aa25.07■■□□□ 1.6
UPF3A-209ENST00000492270 RARAP10276 462 aa25.07■■□□□ 1.6
UPF3A-209ENST00000492270 ADRB3P13945 408 aa25.07■■□□□ 1.6
UPF3A-209ENST00000492270 CD38P28907 300 aa25.07■■□□□ 1.6
UPF3A-209ENST00000492270 PAPOLAP51003 745 aaKnown RBP25.07■■□□□ 1.6
UPF3A-209ENST00000492270 NEK3P51956 506 aa25.07■■□□□ 1.6
UPF3A-209ENST00000492270 RHOAP61586 193 aa25.07■■□□□ 1.6
UPF3A-209ENST00000492270 FAM193AP78312 1265 aa25.07■■□□□ 1.6
UPF3A-209ENST00000492270 SLC25A11Q02978 314 aaKnown RBP25.07■■□□□ 1.6
UPF3A-209ENST00000492270 MAPK8IP2Q13387 824 aaPredicted RBP25.07■■□□□ 1.6
UPF3A-209ENST00000492270 DPYSQ14117 519 aa25.07■■□□□ 1.6
UPF3A-209ENST00000492270 DPYSL2Q16555 572 aa25.07■■□□□ 1.6
UPF3A-209ENST00000492270 NAPEPLDQ6IQ20 393 aa25.07■■□□□ 1.6
UPF3A-209ENST00000492270 PRPF39Q86UA1 669 aaKnown RBP25.07■■□□□ 1.6
UPF3A-209ENST00000492270 ARHGAP12Q8IWW6 846 aa25.07■■□□□ 1.6
UPF3A-209ENST00000492270 TP53INP2Q8IXH6 220 aa25.07■■□□□ 1.6
UPF3A-209ENST00000492270 ZNF564Q8TBZ8 553 aaPredicted RBP25.07■■□□□ 1.6
UPF3A-209ENST00000492270 EXOC2Q96KP1 924 aa25.07■■□□□ 1.6
UPF3A-209ENST00000492270 STAU2Q9NUL3 570 aaKnown RBP eCLIP25.07■■□□□ 1.6
UPF3A-209ENST00000492270 LHX3Q9UBR4 397 aa25.07■■□□□ 1.6
UPF3A-209ENST00000492270 TPX2Q9ULW0 747 aaKnown RBP25.07■■□□□ 1.6
UPF3A-209ENST00000492270 CA5BQ9Y2D0 317 aa25.07■■□□□ 1.6
UPF3A-209ENST00000492270 SPAARA0A1B0GVQ0 90 aa25.06■■□□□ 1.6
UPF3A-209ENST00000492270 A0A1W2PQU0 124 aa25.06■■□□□ 1.6
UPF3A-209ENST00000492270 H0Y8X5 98 aa25.06■■□□□ 1.6
UPF3A-209ENST00000492270 UGT2B4P06133 528 aa25.06■■□□□ 1.6
UPF3A-209ENST00000492270 PRLRP16471 622 aa25.06■■□□□ 1.6
UPF3A-209ENST00000492270 C21orf59P57076 290 aa25.06■■□□□ 1.6
UPF3A-209ENST00000492270 CYTH1Q15438 398 aa25.06■■□□□ 1.6
UPF3A-209ENST00000492270 MYLK3Q32MK0 819 aa25.06■■□□□ 1.6
UPF3A-209ENST00000492270 INO80DQ53TQ3 878 aaPredicted RBP25.06■■□□□ 1.6
UPF3A-209ENST00000492270 AFMIDQ63HM1 303 aa25.06■■□□□ 1.6
UPF3A-209ENST00000492270 ARHGAP36Q6ZRI8 547 aa25.06■■□□□ 1.6
UPF3A-209ENST00000492270 NAXDQ8IW45 347 aa25.06■■□□□ 1.6
UPF3A-209ENST00000492270 CASKIN2Q8WXE0 1202 aa25.06■■□□□ 1.6
UPF3A-209ENST00000492270 GDAP1L1Q96MZ0 367 aa25.06■■□□□ 1.6
UPF3A-209ENST00000492270 DEF6Q9H4E7 631 aa25.06■■□□□ 1.6
UPF3A-209ENST00000492270 UBA2Q9UBT2 640 aaPredicted RBP25.06■■□□□ 1.6
UPF3A-209ENST00000492270 ZFR2Q9UPR6 939 aaKnown RBP25.06■■□□□ 1.6
UPF3A-209ENST00000492270 SSU72P8A0A1W2PR75 194 aa25.05■■□□□ 1.6
UPF3A-209ENST00000492270 ARHGAP42A6NI28 874 aa25.05■■□□□ 1.6
UPF3A-209ENST00000492270 PRAMEF11O60813 436 aa25.05■■□□□ 1.6
UPF3A-209ENST00000492270 PCDH8O95206 1070 aa25.05■■□□□ 1.6
UPF3A-209ENST00000492270 TPM1P09493 284 aa25.05■■□□□ 1.6
UPF3A-209ENST00000492270 ZNF883P0CG24 379 aa25.05■■□□□ 1.6
UPF3A-209ENST00000492270 HCAR3P49019 387 aa25.05■■□□□ 1.6
UPF3A-209ENST00000492270 ZNF423Q2M1K9 1284 aa25.05■■□□□ 1.6
UPF3A-209ENST00000492270 SETMARQ53H47 684 aaPredicted RBP25.05■■□□□ 1.6
UPF3A-209ENST00000492270 BOLA3Q53S33 107 aa25.05■■□□□ 1.6
UPF3A-209ENST00000492270 PRAMEF14Q5SWL7 426 aa25.05■■□□□ 1.6
UPF3A-209ENST00000492270 SEL1L3Q68CR1 1132 aa25.05■■□□□ 1.6
UPF3A-209ENST00000492270 FBXL19Q6PCT2 694 aa25.05■■□□□ 1.6
UPF3A-209ENST00000492270 HORMAD1Q86X24 394 aa25.05■■□□□ 1.6
UPF3A-209ENST00000492270 MYOCQ99972 504 aa25.05■■□□□ 1.6
UPF3A-209ENST00000492270 ETNK2Q9NVF9 386 aa25.05■■□□□ 1.6
UPF3A-209ENST00000492270 ZNHIT6Q9NWK9 470 aaKnown RBP25.05■■□□□ 1.6
UPF3A-209ENST00000492270 DONSONQ9NYP3 566 aa25.05■■□□□ 1.6
UPF3A-209ENST00000492270 CTTNBP2NLQ9P2B4 639 aa25.05■■□□□ 1.6
UPF3A-209ENST00000492270 H3BRJ5 948 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 MYO1FO00160 1098 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 DFFAO00273 331 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 INSIG1O15503 277 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 POP4O95707 220 aaKnown RBP25.04■■□□□ 1.6
UPF3A-209ENST00000492270 IGSF6O95976 241 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 AMPD1P23109 780 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 PMLP29590 882 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 ABL2P42684 1182 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 ZNF135P52742 658 aaPredicted RBP25.04■■□□□ 1.6
UPF3A-209ENST00000492270 IL9RQ01113 521 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 CCDC15Q0P6D6 951 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 TBX2Q13207 712 aaPredicted RBP25.04■■□□□ 1.6
UPF3A-209ENST00000492270 ZNF805Q5CZA5 627 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 SARM1Q6SZW1 724 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 POLNQ7Z5Q5 900 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 CTNNBL1Q8WYA6 563 aaPredicted RBP25.04■■□□□ 1.6
UPF3A-209ENST00000492270 LRIG1Q96JA1 1093 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 KLHL32Q96NJ5 620 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 PCDH18Q9HCL0 1135 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 FZD3Q9NPG1 666 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 SPTLC3Q9NUV7 552 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 GGT7Q9UJ14 662 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 DMTF1Q9Y222 760 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 FADS3Q9Y5Q0 445 aa25.04■■□□□ 1.6
UPF3A-209ENST00000492270 C16orf96A6NNT2 1141 aa25.03■■□□□ 1.6
UPF3A-209ENST00000492270 SLC31A1O15431 190 aa25.03■■□□□ 1.6
UPF3A-209ENST00000492270 AKR1B10O60218 316 aa25.03■■□□□ 1.6
UPF3A-209ENST00000492270 H2AFZP0C0S5 128 aa25.03■■□□□ 1.6
UPF3A-209ENST00000492270 ARL4AP40617 200 aa25.03■■□□□ 1.6
UPF3A-209ENST00000492270 SSR1P43307 286 aaKnown RBP25.03■■□□□ 1.6
UPF3A-209ENST00000492270 ZNF284Q2VY69 593 aa25.03■■□□□ 1.6
UPF3A-209ENST00000492270 NEK5Q6P3R8 708 aa25.03■■□□□ 1.6
UPF3A-209ENST00000492270 H2AFVQ71UI9 128 aa25.03■■□□□ 1.6
UPF3A-209ENST00000492270 TEKT4Q8WW24 435 aa25.03■■□□□ 1.6
UPF3A-209ENST00000492270 CSPG4P5Q96PW8 444 aa25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms