RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 FTCDO95954 541 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 AFPP02771 609 aaKnown RBP3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 NPSP0C0P6 89 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 HSPA1AP0DMV8 641 aaKnown RBP3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 HSPA1BP0DMV9 641 aaKnown RBP3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 SELLP14151 372 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 SFPQP23246 707 aaKnown RBP eCLIP3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 YY1P25490 414 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 CERS1P27544 350 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 PSMC2P35998 433 aaKnown RBP3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 PAFAH1B1P43034 410 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 HSD17B4P51659 736 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 ZNF132P52740 706 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 ACTN3Q08043 901 aaPredicted RBP3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 TFCP2Q12800 502 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 COASYQ13057 564 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 SLC14A1Q13336 389 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 SLMAPQ14BN4 828 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 LY6KQ17RY6 165 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 PTCHD3Q3KNS1 767 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 PLA1AQ53H76 456 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 ZNF628Q5EBL2 1059 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 KRBOX4Q5JUW0 171 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 ERMARDQ5T6L9 678 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 ATPAF1Q5TC12 328 aaPredicted RBP3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 MEX3CQ5U5Q3 659 aaKnown RBP3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 MRNIPQ6NTE8 343 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 INO80CQ6PI98 192 aaPredicted RBP3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 KLHL24Q6TFL4 600 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 SLC9B2Q86UD5 537 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 LCA5Q86VQ0 697 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 RPAP2Q8IXW5 612 aaPredicted RBP3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 SLC15A3Q8IY34 581 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 YAF2Q8IY57 180 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 FAM71DQ8N9W8 422 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 TDRD5Q8NAT2 981 aaKnown RBP3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 IPMKQ8NFU5 416 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 NFKBIDQ8NI38 313 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 RP9Q8TA86 221 aaKnown RBP3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 GDAP1Q8TB36 358 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 RUFY2Q8WXA3 655 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 SLC22A18Q96BI1 424 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 FER1L6-AS2Q96M78 137 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 LENG8Q96PV6 779 aaPredicted RBP3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 MESP1Q9BRJ9 268 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 RANBP17Q9H2T7 1088 aaKnown RBP3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 SCPEP1Q9HB40 452 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 CHCHD3Q9NX63 227 aaKnown RBP3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 DCAF16Q9NXF7 216 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 DNMT3BQ9UBC3 853 aaKnown RBP3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 SLCO3A1Q9UIG8 710 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 HPSEQ9Y251 543 aa3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 MTF2Q9Y483 593 aaPredicted RBP3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.37□□□□□ -1.87
DEPDC1-204ENST00000489862 CD109Q6YHK3 1445 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 KIF14Q15058 1648 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 TTC37Q6PGP7 1564 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 ZNF644Q9H582 1327 aaPredicted RBP3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 ARHGEF12Q9NZN5 1544 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 A0A0U1RQK1 487 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 ZNF320A2RRD8 509 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 OR2W5A6NFC9 320 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 FAM90A7PA6NKC0 464 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 FAM90A22PA8MWA6 464 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 FAM90A12PA8MX19 464 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 FAM90A23PA8MXZ1 464 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 MYO1CO00159 1063 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 CAPN9O14815 690 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 FYB1O15117 783 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 DIAPH2O60879 1101 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 TBCAO75347 108 aaKnown RBP3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 SLU7O95391 586 aaKnown RBP3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 VNN1O95497 513 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 GUCA1CO95843 209 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 SNRNP70P08621 437 aaKnown RBP3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 STMN1P16949 149 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 ATP5DP30049 168 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 LRPAP1P30533 357 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 PSMB10P40306 273 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 MSH2P43246 934 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 ALDH3A2P51648 485 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 ADARP55265 1226 aaKnown RBP3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 POLE2P56282 527 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 CEBPZQ03701 1054 aaKnown RBP3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 KRT17Q04695 432 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 BFSP1Q12934 665 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 ARHGEF7Q14155 803 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 MORN5Q5VZ52 161 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 ADALQ6DHV7 355 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 MSANTD2Q6P1R3 559 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 WDR73Q6P4I2 378 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 IYDQ6PHW0 289 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 TRIM72Q6ZMU5 477 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 RAPH1Q70E73 1250 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 USP43Q70EL4 1123 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 LRRC8DQ7L1W4 858 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 THNSL1Q8IYQ7 743 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 PLD5Q8N7P1 536 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 OSCP1Q8WVF1 389 aa3.36□□□□□ -1.87
DEPDC1-204ENST00000489862 HMGB4Q8WW32 186 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms