RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 LAMTOR5O43504 91 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 SMAD6O43541 496 aaKnown RBP10.46□□□□□ -0.73
SKA1-204ENST00000488454 GPR37L1O60883 481 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 ADAM23O75077 832 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 TMCC1O94876 653 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 CD160O95971 181 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 IGSF6O95976 241 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 JCHAINP01591 159 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 RBP3P10745 1247 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 HLA-EP13747 358 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 CCNB1P14635 433 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 AVPR2P30518 371 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 HSPA9P38646 679 aaKnown RBP10.46□□□□□ -0.73
SKA1-204ENST00000488454 MMP13P45452 471 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 RAD51Q06609 339 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 MTAPQ13126 283 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 ENPP2Q13822 863 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 CYTH1Q15438 398 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 CRY1Q16526 586 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 SLC45A4Q5BKX6 768 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 CARD16Q5EG05 197 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 HEATR6Q6AI08 1181 aaKnown RBP10.46□□□□□ -0.73
SKA1-204ENST00000488454 C22orf39Q6P5X5 142 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 DSG4Q86SJ6 1040 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 PGBD3Q8N328 593 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 RASGEF1CQ8N431 466 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 ZNF366Q8N895 744 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 ARMC2Q8NEN0 867 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 KIF18AQ8NI77 898 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 FRS2Q8WU20 508 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 OR8D1Q8WZ84 308 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 MYO19Q96H55 970 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 FAM118BQ9BPY3 351 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 HERPUD2Q9BSE4 406 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 TM6SF2Q9BZW4 377 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 TNKS2Q9H2K2 1166 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 FBRSQ9HAH7 460 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 ZNF148Q9UQR1 794 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 ACTL7AQ9Y615 435 aa10.46□□□□□ -0.73
SKA1-204ENST00000488454 COL4A2P08572 1712 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 KCNK1O00180 336 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 KRIT1O00522 736 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 DLL1O00548 723 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 SIN3BO75182 1162 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 URI1O94763 535 aaPredicted RBP10.45□□□□□ -0.74
SKA1-204ENST00000488454 POP4O95707 220 aaKnown RBP10.45□□□□□ -0.74
SKA1-204ENST00000488454 GSRP00390 522 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 CES1P23141 567 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 STIP1P31948 543 aaKnown RBP10.45□□□□□ -0.74
SKA1-204ENST00000488454 NSUN2Q08J23 767 aaKnown RBP eCLIP10.45□□□□□ -0.74
SKA1-204ENST00000488454 SLC10A7Q0GE19 358 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 SFSWAPQ12872 951 aaKnown RBP10.45□□□□□ -0.74
SKA1-204ENST00000488454 CAMK2GQ13555 558 aaPredicted RBP10.45□□□□□ -0.74
SKA1-204ENST00000488454 SNX1Q13596 522 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 BYSLQ13895 437 aaKnown RBP10.45□□□□□ -0.74
SKA1-204ENST00000488454 GAS6Q14393 721 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 ELAVL3Q14576 367 aaKnown RBP10.45□□□□□ -0.74
SKA1-204ENST00000488454 PRKD1Q15139 912 aaPredicted RBP10.45□□□□□ -0.74
SKA1-204ENST00000488454 CCNG2Q16589 344 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 C9orf64Q5T6V5 341 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 PKN3Q6P5Z2 889 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 Q6ZVU0 165 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 B4GALNT4Q76KP1 1039 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 TEX26Q8N6G2 289 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 TMEM105Q8N8V8 129 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 DTWD2Q8NBA8 298 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 TSEN2Q8NCE0 465 aaKnown RBP10.45□□□□□ -0.74
SKA1-204ENST00000488454 TSTD1Q8NFU3 115 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 OR2AP1Q8NGE2 309 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 OR2T3Q8NH03 318 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 C1orf54Q8WWF1 131 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 HTR3CQ8WXA8 447 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 MAML1Q92585 1016 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 PTPRN2Q92932 1015 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 FOXJ1Q92949 421 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 ERLEC1Q96DZ1 483 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 CAPZA3Q96KX2 299 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 GDAP1L1Q96MZ0 367 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 QKIQ96PU8 341 aaKnown RBP eCLIP10.45□□□□□ -0.742e-9■■■■■ 48.3
SKA1-204ENST00000488454 PSKH2Q96QS6 385 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 VAT1Q99536 393 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 NT5MQ9NPB1 228 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 PRSS16Q9NQE7 514 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 DLGAP2Q9P1A6 1054 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 BCCIPQ9P287 314 aaKnown RBP eCLIP10.45□□□□□ -0.74
SKA1-204ENST00000488454 AMACRQ9UHK6 382 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 R3HDM2Q9Y2K5 976 aaKnown RBP10.45□□□□□ -0.74
SKA1-204ENST00000488454 TTLL3Q9Y4R7 772 aa10.45□□□□□ -0.74
SKA1-204ENST00000488454 NCOR1O75376 2440 aa10.44□□□□□ -0.74
SKA1-204ENST00000488454 A0A1W2PQF6 199 aa10.44□□□□□ -0.74
SKA1-204ENST00000488454 TCRBV21S2A2A0A5A6 115 aa10.44□□□□□ -0.74
SKA1-204ENST00000488454 BCLAF3A2AJT9 711 aaKnown RBP10.44□□□□□ -0.74
SKA1-204ENST00000488454 CFAP69A5D8W1 941 aa10.44□□□□□ -0.74
SKA1-204ENST00000488454 C1QTNF3-AMACRE9PGA6 284 aa10.44□□□□□ -0.74
SKA1-204ENST00000488454 ALOX15BO15296 676 aa10.44□□□□□ -0.74
SKA1-204ENST00000488454 KCNN4O15554 427 aa10.44□□□□□ -0.74
SKA1-204ENST00000488454 LIASO43766 372 aa10.44□□□□□ -0.74
SKA1-204ENST00000488454 APBB3O95704 486 aa10.44□□□□□ -0.74
SKA1-204ENST00000488454 PEX11BO96011 259 aa10.44□□□□□ -0.74
SKA1-204ENST00000488454 PRNPP04156 253 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms