RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	GRM3	Q14832	879 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	ANGPT1	Q15389	498 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	TTC31	Q49AM3	519 aa	Predicted RBP	13.35	□□□□□ -0.27
SF1-206	ENST00000413725	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	13.35	□□□□□ -0.27
SF1-206	ENST00000413725	FAM46C	Q5VWP2	391 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	ZSCAN30	Q86W11	494 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	RASSF3	Q86WH2	238 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	MMAA	Q8IVH4	418 aa	Known RBP	13.35	□□□□□ -0.27
SF1-206	ENST00000413725	MDGA1	Q8NFP4	955 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	COG1	Q8WTW3	980 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	HTR3C	Q8WXA8	447 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	SIPA1	Q96FS4	1042 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	LRIG1	Q96JA1	1093 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	EXOC2	Q96KP1	924 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	MRGPRX1	Q96LB2	322 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	VAT1	Q99536	393 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	IL12RB2	Q99665	862 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	FAM118B	Q9BPY3	351 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	MGME1	Q9BQP7	344 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	HEPH	Q9BQS7	1158 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	FAM126A	Q9BYI3	521 aa	Predicted RBP	13.35	□□□□□ -0.27
SF1-206	ENST00000413725	POLR1E	Q9GZS1	481 aa	Known RBP	13.35	□□□□□ -0.27
SF1-206	ENST00000413725	MKRN2	Q9H000	416 aa	Known RBP	13.35	□□□□□ -0.27
SF1-206	ENST00000413725	ZDHHC6	Q9H6R6	413 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	NT5M	Q9NPB1	228 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	HOMER3	Q9NSC5	361 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	EBF1	Q9UH73	591 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	TTC7A	Q9ULT0	858 aa	Predicted RBP	13.35	□□□□□ -0.27
SF1-206	ENST00000413725	SCML1	Q9UN30	329 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	TTLL3	Q9Y4R7	772 aa		13.35	□□□□□ -0.27
SF1-206	ENST00000413725	PI4KA	P42356	2102 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	CCDC163	A0A0D9SF12	145 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	CFAP69	A5D8W1	941 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	KRIT1	O00522	736 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	AXIN1	O15169	862 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	IL1B	P01584	269 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	JCHAIN	P01591	159 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	CES1	P23141	567 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	PSMD8	P48556	350 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	AP1S1	P61966	158 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	RPS14	P62263	151 aa	Known RBP	13.34	□□□□□ -0.27
SF1-206	ENST00000413725	ITK	Q08881	620 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	CST6	Q15828	149 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	MYLK3	Q32MK0	819 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	ZNF528	Q3MIS6	628 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	RALGPS1	Q5JS13	557 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	TSSK4	Q6SA08	328 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	B4GALNT4	Q76KP1	1039 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	SRL	Q86TD4	932 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	CACUL1	Q86Y37	369 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	MAML2	Q8IZL2	1156 aa	Predicted RBP	13.34	□□□□□ -0.27
SF1-206	ENST00000413725	CHST14	Q8NCH0	376 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	TMIE	Q8NEW7	156 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	OR6K2	Q8NGY2	324 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	SLC35B2	Q8TB61	432 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	PIP4K2C	Q8TBX8	421 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	GRIN3A	Q8TCU5	1115 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	ACTRT1	Q8TDG2	376 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	MS4A14	Q96JA4	679 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	FAM129B	Q96TA1	746 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	OSBPL1A	Q9BXW6	950 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	SCUBE2	Q9NQ36	999 aa		13.34	□□□□□ -0.27
SF1-206	ENST00000413725	EVL	Q9UI08	416 aa	Predicted RBP	13.34	□□□□□ -0.27
SF1-206	ENST00000413725	R3HDM2	Q9Y2K5	976 aa	Known RBP	13.34	□□□□□ -0.27
SF1-206	ENST00000413725	GOLGA6L10	A0A0M3HER8	536 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	BCLAF3	A2AJT9	711 aa	Known RBP	13.33	□□□□□ -0.28
SF1-206	ENST00000413725	RNF103	O00237	685 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	MUSK	O15146	869 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	KCNN4	O15554	427 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	LIAS	O43766	372 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	ZNF217	O75362	1048 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	LEFTY1	O75610	366 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	HLA-DQB2	P05538	268 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	C7	P10643	843 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	TDGF1	P13385	188 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	C5AR1	P21730	350 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	PTPN3	P26045	913 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	RBL1	P28749	1068 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	RGR	P47804	291 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	PXN	P49023	591 aa	Predicted RBP	13.33	□□□□□ -0.28
SF1-206	ENST00000413725	SCNN1B	P51168	640 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	MAX	P61244	160 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	ZBTB17	Q13105	803 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	BYSL	Q13895	437 aa	Known RBP	13.33	□□□□□ -0.28
SF1-206	ENST00000413725	CCNG2	Q16589	344 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	TEX44	Q53QW1	395 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	ARSI	Q5FYB1	569 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	PGBD5	Q8N414	524 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	GANC	Q8TET4	914 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	ATG4A	Q8WYN0	398 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	PPP1R16A	Q96I34	528 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	AGAP3	Q96P47	875 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	NUDCD1	Q96RS6	583 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	TUBGCP5	Q96RT8	1024 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	CPEB1	Q9BZB8	566 aa	Known RBP	13.33	□□□□□ -0.28
SF1-206	ENST00000413725	TPSD1	Q9BZJ3	242 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	SLC6A17	Q9H1V8	727 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	PABPC3	Q9H361	631 aa	Known RBP	13.33	□□□□□ -0.28
SF1-206	ENST00000413725	ATP13A3	Q9H7F0	1226 aa		13.33	□□□□□ -0.28
SF1-206	ENST00000413725	DYRK4	Q9NR20	520 aa		13.33	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms