RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 PKN3Q6P5Z2 889 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 GLT6D1Q7Z4J2 308 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 CPT1BQ92523 772 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 TOP1MTQ969P6 601 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 SGF29Q96ES7 293 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 TCF25Q9BQ70 676 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 ASB8Q9H765 288 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 IARS2Q9NSE4 1012 aaKnown RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 THAP1Q9NVV9 213 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 MPP6Q9NZW5 540 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 SAE1Q9UBE0 346 aaPredicted RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 VWA7Q9Y334 891 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 CCDC85CA6NKD9 419 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 ADAM17P78536 824 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 TGM3Q08188 693 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 CACNA1SQ13698 1873 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 OASLQ15646 514 aaKnown RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 KIF19Q2TAC6 998 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 TMTC4Q5T4D3 741 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 LYPLAL1Q5VWZ2 237 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 HS6ST3Q8IZP7 471 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 POP5Q969H6 163 aaKnown RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 PGAP3Q96FM1 320 aaPredicted RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 ACE2Q9BYF1 805 aaPredicted RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 TLR9Q9NR96 1032 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 TMCO1Q9UM00 188 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 PCDHB1Q9Y5F3 818 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 AKAP11Q9UKA4 1901 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 CASZ1Q86V15 1759 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 TCRBV9S1A1TA0A576 114 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 KANSL1LA0AUZ9 987 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 SOBPA7XYQ1 873 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 ZNF839A8K0R7 811 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 TMEM114B3SHH9 223 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 PTK2BQ14289 1009 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 EFTUD2Q15029 972 aaKnown RBP eCLIP6.94□□□□□ -1.31e-6■■■■□ 25.4
SF3B1-201ENST00000335508 SYPL2Q5VXT5 272 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 SLC9A4Q6AI14 798 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 GRAMD4Q6IC98 578 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 ZNF783Q6ZMS7 281 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 ZNF598Q86UK7 904 aaKnown RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 TRABD2AQ86V40 505 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 ZNF280BQ86YH2 543 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 SLC39A11Q8N1S5 342 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 CPA6Q8N4T0 437 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 RDH11Q8TC12 318 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 CCDC124Q96CT7 223 aaKnown RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 PSKH2Q96QS6 385 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 TRIM15Q9C019 465 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 ELOVL6Q9H5J4 265 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 PHPT1Q9NRX4 125 aaPredicted RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 WBP1LQ9NX94 342 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 VTI1BQ9UEU0 232 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 POLG2Q9UHN1 485 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 ZNF180Q9UJW8 692 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 RRP15Q9Y3B9 282 aaKnown RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 L3MBTL1Q9Y468 752 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 TRAFD1O14545 582 aaPredicted RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 ZW10O43264 779 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 MSI1O43347 362 aaKnown RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 TBL1XO60907 577 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 TCEA3O75764 348 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 CHRNA1P02708 482 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 CTSAP10619 480 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 RPL17P18621 184 aaKnown RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 PPARDQ03181 441 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 GALNT2Q10471 571 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 LBRQ14739 615 aaKnown RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 AASDHQ4L235 1098 aaPredicted RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 PRSS55Q6UWB4 352 aaPredicted RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 FBXO39Q8N4B4 442 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 ARL14EPQ8N8R7 260 aaPredicted RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 MAB21L3Q8N8X9 362 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 PIWIL2Q8TC59 973 aaKnown RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 SSU72Q9NP77 194 aaKnown RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.94□□□□□ -1.33e-11■■□□□ 13.1
SF3B1-201ENST00000335508 KCNE2Q9Y6J6 123 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 SPACA6W5XKT8 324 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 TIAM2Q8IVF5 1701 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 ABLIM1O14639 778 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 SPAG7O75391 227 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 ESR1P03372 595 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 PAFAH1B3Q15102 231 aaKnown RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 MPP7Q5T2T1 576 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 SEL1L3Q68CR1 1132 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 DDIASQ8IXT1 998 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 SCAMP5Q8TAC9 235 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 EPS8L3Q8TE67 593 aaKnown RBP6.94□□□□□ -1.3
SF3B1-201ENST00000335508 ERP27Q96DN0 273 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 MAGEB18Q96M61 343 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 RBBP8Q99708 897 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 FAM83DQ9H4H8 585 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 YY1AP1Q9H869 796 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 GID8Q9NWU2 228 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 EVPLLA8MZ36 301 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 ZBTB42B2RXF5 422 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 ZBTB14O43829 449 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 MFSD11O43934 449 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 TRIM16O95361 564 aa6.93□□□□□ -1.3
SF3B1-201ENST00000335508 ANXA5P08758 320 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms