RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 GEMIN4P57678 1058 aaKnown RBP15.05■□□□□ -0
CCDC88B-201ENST00000301897 SKOR1P84550 965 aa15.05■□□□□ -0
CCDC88B-201ENST00000301897 PDE1CQ14123 709 aaPredicted RBP15.05■□□□□ -0
CCDC88B-201ENST00000301897 PTK2BQ14289 1009 aa15.05■□□□□ -0
CCDC88B-201ENST00000301897 CDKN3Q16667 212 aa15.05■□□□□ -0
CCDC88B-201ENST00000301897 SLC25A52Q3SY17 297 aa15.05■□□□□ -0
CCDC88B-201ENST00000301897 PTPN20Q4JDL3 420 aa15.05■□□□□ -0
CCDC88B-201ENST00000301897 CARD16Q5EG05 197 aa15.05■□□□□ -0
CCDC88B-201ENST00000301897 OTUD1Q5VV17 481 aaPredicted RBP15.05■□□□□ -0
CCDC88B-201ENST00000301897 EFL1Q7Z2Z2 1120 aaKnown RBP15.05■□□□□ -0
CCDC88B-201ENST00000301897 TMEM35BQ8NCS4 154 aa15.05■□□□□ -0
CCDC88B-201ENST00000301897 WDR36Q8NI36 951 aaKnown RBP15.05■□□□□ -0
CCDC88B-201ENST00000301897 TTC9Q92623 222 aa15.05■□□□□ -0
CCDC88B-201ENST00000301897 HAPLN3Q96S86 360 aa15.05■□□□□ -0
CCDC88B-201ENST00000301897 SPON2Q9BUD6 331 aa15.05■□□□□ -0
CCDC88B-201ENST00000301897 RETREG1Q9H6L5 497 aa15.05■□□□□ -0
CCDC88B-201ENST00000301897 ATP13A1Q9HD20 1204 aa15.05■□□□□ -0
CCDC88B-201ENST00000301897 MPP6Q9NZW5 540 aa15.05■□□□□ -0
CCDC88B-201ENST00000301897 K7ENP7 123 aa15.04■□□□□ -0
CCDC88B-201ENST00000301897 TOR1BO14657 336 aa15.04■□□□□ -0
CCDC88B-201ENST00000301897 ENDOD1O94919 500 aa15.04■□□□□ -0
CCDC88B-201ENST00000301897 MYF5P13349 255 aa15.04■□□□□ -0
CCDC88B-201ENST00000301897 SLC9A1P19634 815 aa15.04■□□□□ -0
CCDC88B-201ENST00000301897 DNA2P51530 1060 aa15.04■□□□□ -0
CCDC88B-201ENST00000301897 CCNHP51946 323 aaPredicted RBP15.04■□□□□ -0
CCDC88B-201ENST00000301897 RNASE9P60153 205 aaKnown RBP15.04■□□□□ -0
CCDC88B-201ENST00000301897 FGL2Q14314 439 aa15.04■□□□□ -0
CCDC88B-201ENST00000301897 GUSBP11Q6P575 273 aa15.04■□□□□ -0
CCDC88B-201ENST00000301897 GJB7Q6PEY0 223 aa15.04■□□□□ -0
CCDC88B-201ENST00000301897 INO80CQ6PI98 192 aaPredicted RBP15.04■□□□□ -0
CCDC88B-201ENST00000301897 MSANTD4Q8NCY6 345 aa15.04■□□□□ -0
CCDC88B-201ENST00000301897 OR7D4Q8NG98 312 aa15.04■□□□□ -0
CCDC88B-201ENST00000301897 LMX1AQ8TE12 382 aa15.04■□□□□ -0
CCDC88B-201ENST00000301897 MED8Q96G25 268 aa15.04■□□□□ -0
CCDC88B-201ENST00000301897 ATXN7L3BQ96GX2 97 aa15.04■□□□□ -0
CCDC88B-201ENST00000301897 BOCQ9BWV1 1114 aa15.04■□□□□ -0
CCDC88B-201ENST00000301897 C1QTNF7Q9BXJ2 289 aa15.04■□□□□ -0
CCDC88B-201ENST00000301897 ZYG11BQ9C0D3 744 aa15.04■□□□□ -0
CCDC88B-201ENST00000301897 ENTPD2Q9Y5L3 495 aa15.04■□□□□ -0
CCDC88B-201ENST00000301897 TLN1Q9Y490 2541 aaKnown RBP15.04■□□□□ -0
CCDC88B-201ENST00000301897 KIF26BQ2KJY2 2108 aa15.04■□□□□ -0
CCDC88B-201ENST00000301897 IGLON5A6NGN9 336 aa15.03■□□□□ -0
CCDC88B-201ENST00000301897 CDRT15L2A8MXV6 281 aa15.03■□□□□ -0
CCDC88B-201ENST00000301897 LMO7DNF2Z398 122 aa15.03■□□□□ -0
CCDC88B-201ENST00000301897 BIN1O00499 593 aa15.03■□□□□ -0
CCDC88B-201ENST00000301897 RAD51BO15315 384 aa15.03■□□□□ -0
CCDC88B-201ENST00000301897 ZNF821O75541 412 aaPredicted RBP15.03■□□□□ -0
CCDC88B-201ENST00000301897 ZMPSTE24O75844 475 aa15.03■□□□□ -0
CCDC88B-201ENST00000301897 GABRB2P47870 512 aa15.03■□□□□ -0
CCDC88B-201ENST00000301897 THOP1P52888 689 aa15.03■□□□□ -0
CCDC88B-201ENST00000301897 PFN3P60673 137 aa15.03■□□□□ -0
CCDC88B-201ENST00000301897 YPEL5P62699 121 aa15.03■□□□□ -0
CCDC88B-201ENST00000301897 GNA12Q03113 381 aa15.03■□□□□ -0
CCDC88B-201ENST00000301897 DEFB133Q30KQ1 61 aa15.03■□□□□ -0
CCDC88B-201ENST00000301897 ZNF805Q5CZA5 627 aa15.03■□□□□ -0
CCDC88B-201ENST00000301897 PARS2Q7L3T8 475 aaKnown RBP15.03■□□□□ -0
CCDC88B-201ENST00000301897 CLEC14AQ86T13 490 aa15.03■□□□□ -0
CCDC88B-201ENST00000301897 C18orf8Q96DM3 657 aa15.03■□□□□ -0
CCDC88B-201ENST00000301897 KLF6Q99612 283 aaPredicted RBP15.03■□□□□ -0
CCDC88B-201ENST00000301897 SLC13A1Q9BZW2 595 aa15.03■□□□□ -0
CCDC88B-201ENST00000301897 PDCL3Q9H2J4 239 aa15.03■□□□□ -0
CCDC88B-201ENST00000301897 ZDHHC6Q9H6R6 413 aa15.03■□□□□ -0
CCDC88B-201ENST00000301897 PPARGC1AQ9UBK2 798 aaKnown RBP15.03■□□□□ -0
CCDC88B-201ENST00000301897 APOBEC3BQ9UH17 382 aaKnown RBP15.03■□□□□ -0
CCDC88B-201ENST00000301897 RWDD2AQ9UIY3 292 aa15.03■□□□□ -0
CCDC88B-201ENST00000301897 CCDC187A0A096LP49 1063 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 C16orf96A6NNT2 1141 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 TMX2-CTNND1H3BSU7 103 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 I6L893 689 aaPredicted RBP15.02■□□□□ -0
CCDC88B-201ENST00000301897 SRGAP2O75044 1071 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 ANXA6P08133 673 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 ITGA2BP08514 1039 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 PRKCSHP14314 528 aaPredicted RBP15.02■□□□□ -0
CCDC88B-201ENST00000301897 TFE3P19532 575 aaPredicted RBP15.02■□□□□ -0
CCDC88B-201ENST00000301897 PON1P27169 355 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 CDH5P33151 784 aaPredicted RBP15.02■□□□□ -0
CCDC88B-201ENST00000301897 SPIDRQ14159 915 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 LY6DQ14210 128 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 POLD3Q15054 466 aaPredicted RBP15.02■□□□□ -0
CCDC88B-201ENST00000301897 C6orf132Q5T0Z8 1188 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 FAM102AQ5T9C2 384 aaPredicted RBP15.02■□□□□ -0
CCDC88B-201ENST00000301897 ESRP1Q6NXG1 681 aaKnown RBP15.02■□□□□ -0
CCDC88B-201ENST00000301897 XKR5Q6UX68 686 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 CCDC81Q6ZN84 652 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 SLC47A2Q86VL8 602 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 SCG3Q8WXD2 468 aaKnown RBP15.02■□□□□ -0
CCDC88B-201ENST00000301897 TBCBQ99426 244 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 OSBPL1AQ9BXW6 950 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 CLMPQ9H6B4 373 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 ANLNQ9NQW6 1124 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.02■□□□□ -0
CCDC88B-201ENST00000301897 ZNF212Q9UDV6 495 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 KLF15Q9UIH9 416 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 HPCAL4Q9UM19 191 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 GTF3C3Q9Y5Q9 886 aa15.02■□□□□ -0
CCDC88B-201ENST00000301897 COL27A1Q8IZC6 1860 aaPredicted RBP15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 RNF103O00237 685 aa15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 FOXN3O00409 490 aaPredicted RBP15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 MUSKO15146 869 aa15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 POP4O95707 220 aaKnown RBP15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms