RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 MED21Q13503 144 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 HP1BP3Q5SSJ5 553 aaPredicted RBP13.82□□□□□ -0.2
LDLR-201ENST00000252444 ADAM32Q8TC27 787 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 ZNF473Q8WTR7 871 aaKnown RBP13.82□□□□□ -0.2
LDLR-201ENST00000252444 KAT2BQ92831 832 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 PPWD1Q96BP3 646 aaKnown RBP13.82□□□□□ -0.2
LDLR-201ENST00000252444 SEMA3CQ99985 751 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 POLMQ9NP87 494 aaPredicted RBP13.82□□□□□ -0.2
LDLR-201ENST00000252444 CRYL1Q9Y2S2 319 aa13.82□□□□□ -0.2
LDLR-201ENST00000252444 USP1O94782 785 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 KRT72Q14CN4 511 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 FAXCQ5TGI0 409 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 FBXO39Q8N4B4 442 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 KLHDC9Q8NEP7 349 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 AZIN2Q96A70 460 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 PAWRQ96IZ0 340 aaKnown RBP13.81□□□□□ -0.2
LDLR-201ENST00000252444 DNAAF2Q9NVR5 837 aaKnown RBP13.81□□□□□ -0.2
LDLR-201ENST00000252444 RRP15Q9Y3B9 282 aaKnown RBP13.81□□□□□ -0.2
LDLR-201ENST00000252444 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.81□□□□□ -0.2
LDLR-201ENST00000252444 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.81□□□□□ -0.2
LDLR-201ENST00000252444 KPNA3O00505 521 aaPredicted RBP13.81□□□□□ -0.2
LDLR-201ENST00000252444 ZNF470Q6ECI4 717 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 APTXQ7Z2E3 356 aaKnown RBP13.81□□□□□ -0.2
LDLR-201ENST00000252444 C4orf33Q8N1A6 199 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 CDC26Q8NHZ8 85 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 NRBF2Q96F24 287 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 APOL5Q9BWW9 433 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 PHPT1Q9NRX4 125 aaPredicted RBP13.81□□□□□ -0.2
LDLR-201ENST00000252444 STX18Q9P2W9 335 aaKnown RBP13.81□□□□□ -0.2
LDLR-201ENST00000252444 RAB23Q9ULC3 237 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 REXO2Q9Y3B8 237 aaKnown RBP13.81□□□□□ -0.2
LDLR-201ENST00000252444 BAG2O95816 211 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 LSP1P33241 339 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 CACNG1Q06432 222 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 C16orf59Q7L2K0 433 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 ZNF514Q96K75 400 aaPredicted RBP13.81□□□□□ -0.2
LDLR-201ENST00000252444 SPDYE7PQ495Y7 208 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 PLD5Q8N7P1 536 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 ARL8AQ96BM9 186 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 P2RY11Q96G91 374 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 INTS7Q9NVH2 962 aaKnown RBP13.81□□□□□ -0.2
LDLR-201ENST00000252444 MTRRQ9UBK8 725 aa13.81□□□□□ -0.2
LDLR-201ENST00000252444 TNS1Q9HBL0 1735 aaKnown RBP13.8□□□□□ -0.2
LDLR-201ENST00000252444 FAM95CA0A1B0GW59 222 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 LRRC72A6NJI9 287 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 C9IYK1 514 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 ANXA5P08758 320 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 THOP1P52888 689 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 GRSF1Q12849 480 aaKnown RBP eCLIP13.8□□□□□ -0.2
LDLR-201ENST00000252444 POU6F1Q14863 301 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 ADGRF1Q5T601 910 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 CYB5D1Q6P9G0 228 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 CRELD2Q6UXH1 353 aaPredicted RBP13.8□□□□□ -0.2
LDLR-201ENST00000252444 SLC51AQ86UW1 340 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 TFAP2BQ92481 460 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 TUBGCP5Q96RT8 1024 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 FAM118BQ9BPY3 351 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 ARHGEF4Q9NR80 690 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 GJD2Q9UKL4 321 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 INSL5Q9Y5Q6 135 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 PIPSLA2A3N6 862 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 URADA6NGE7 173 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 TAS1R3Q7RTX0 852 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 PCDH20Q8N6Y1 951 aaKnown RBP13.8□□□□□ -0.2
LDLR-201ENST00000252444 ATAD1Q8NBU5 361 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 MYCBPQ99417 103 aaPredicted RBP13.8□□□□□ -0.2
LDLR-201ENST00000252444 MRPL57Q9BQC6 102 aaKnown RBP13.8□□□□□ -0.2
LDLR-201ENST00000252444 MRM3Q9HC36 420 aaKnown RBP13.8□□□□□ -0.2
LDLR-201ENST00000252444 MYBPHLA2RUH7 354 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 CCNG1P51959 295 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 PPIDQ08752 370 aaKnown RBP13.8□□□□□ -0.2
LDLR-201ENST00000252444 SRLQ86TD4 932 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 KRT78Q8N1N4 520 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 ATXN7L3BQ96GX2 97 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 LRIG1Q96JA1 1093 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 FCRL5Q96RD9 977 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 HEPHQ9BQS7 1158 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 TFR2Q9UP52 801 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 HEBP2Q9Y5Z4 205 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 GABRDO14764 452 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 FGF18O76093 207 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 GALTP07902 379 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 HSD17B2P37059 387 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 TCEA2Q15560 299 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 FAM133BQ5BKY9 247 aaKnown RBP13.8□□□□□ -0.2
LDLR-201ENST00000252444 HIBCHQ6NVY1 386 aaPredicted RBP13.8□□□□□ -0.2
LDLR-201ENST00000252444 TRIML2Q8N7C3 387 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 SMG8Q8ND04 991 aaKnown RBP13.8□□□□□ -0.2
LDLR-201ENST00000252444 ARMC2Q8NEN0 867 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 CMASQ8NFW8 434 aaPredicted RBP13.8□□□□□ -0.2
LDLR-201ENST00000252444 CCT8L2Q96SF2 557 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 CFHR5Q9BXR6 569 aa13.8□□□□□ -0.2
LDLR-201ENST00000252444 INTS10Q9NVR2 710 aaKnown RBP13.8□□□□□ -0.2
LDLR-201ENST00000252444 KLHL33A6NCF5 533 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 CCL16O15467 120 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 FLT3P36888 993 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 SPAM1P38567 509 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 SKOR1P84550 965 aa13.79□□□□□ -0.2
LDLR-201ENST00000252444 AUHQ13825 339 aaKnown RBP13.79□□□□□ -0.2
LDLR-201ENST00000252444 PAFAH1B3Q15102 231 aaKnown RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms