RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 HDAC11Q96DB2 347 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 TPSD1Q9BZJ3 242 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 MKRN2Q9H000 416 aaKnown RBP19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 HAUS2Q9NVX0 235 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 ZSCAN32Q9NX65 697 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 SEPT3Q9UH03 358 aa19.43■□□□□ 0.7
SQSTM1-216ENST00000626660 WDFY4Q6ZS81 3184 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 MCF2LO15068 1137 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 MATN3O15232 486 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 ZNF821O75541 412 aaPredicted RBP19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 DNTTP04053 509 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 RPS14P62263 151 aaKnown RBP19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 ZBTB16Q05516 673 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 RAD51Q06609 339 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 ZNF33AQ06730 810 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 ADCY2Q08462 1091 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 DMWDQ09019 674 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 SFSWAPQ12872 951 aaKnown RBP19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 BYSLQ13895 437 aaKnown RBP19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 TTC31Q49AM3 519 aaPredicted RBP19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 MARC1Q5VT66 337 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 FAM46CQ5VWP2 391 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 CACUL1Q86Y37 369 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 CCDC13Q8IYE1 715 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 PRSS33Q8NF86 280 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 FATE1Q969F0 183 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 OLFM3Q96PB7 478 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 FAM129BQ96TA1 746 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 SLC6A17Q9H1V8 727 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 KCND1Q9NSA2 647 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 SAE1Q9UBE0 346 aaPredicted RBP19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 LHX3Q9UBR4 397 aa19.42■□□□□ 0.7
SQSTM1-216ENST00000626660 C1QTNF3-AMACRE9PGA6 284 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 H0Y858 1186 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 ZNF217O75362 1048 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 ADH1BP00325 375 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 IL1BP01584 269 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 PRNPP04156 253 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 PECAM1P16284 738 aaPredicted RBP19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 CHRNA3P32297 505 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 HSPA9P38646 679 aaKnown RBP19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 MMP13P45452 471 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 PSMD8P48556 350 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 CCNHP51946 323 aaPredicted RBP19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 GNG11P61952 73 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 PPIDQ08752 370 aaKnown RBP19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 AP1B1Q10567 949 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 HNRNPDQ14103 355 aaKnown RBP19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 CST6Q15828 149 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 USP39Q53GS9 565 aaKnown RBP19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 HS1BP3Q53T59 392 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 DPY19L3Q6ZPD9 716 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 MMAAQ8IVH4 418 aaKnown RBP19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 TTC13Q8NBP0 860 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 NELL1Q92832 810 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 SPACA7Q96KW9 195 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 LGMNQ99538 433 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 HEPHQ9BQS7 1158 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 HERPUD2Q9BSE4 406 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 IL36AQ9UHA7 158 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 SCML1Q9UN30 329 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 PCDHGA2Q9Y5H1 932 aa19.41■□□□□ 0.7
SQSTM1-216ENST00000626660 KRIT1O00522 736 aa19.4■□□□□ 0.7
SQSTM1-216ENST00000626660 ENC1O14682 589 aa19.4■□□□□ 0.7
SQSTM1-216ENST00000626660 POP4O95707 220 aaKnown RBP19.4■□□□□ 0.7
SQSTM1-216ENST00000626660 PEX11BO96011 259 aa19.4■□□□□ 0.7
SQSTM1-216ENST00000626660 SLC10A7Q0GE19 358 aa19.4■□□□□ 0.7
SQSTM1-216ENST00000626660 MYLK3Q32MK0 819 aa19.4■□□□□ 0.7
SQSTM1-216ENST00000626660 ATXN7L2Q5T6C5 722 aaPredicted RBP19.4■□□□□ 0.7
SQSTM1-216ENST00000626660 ZC3H14Q6PJT7 736 aaKnown RBP19.4■□□□□ 0.7
SQSTM1-216ENST00000626660 TSEN2Q8NCE0 465 aaKnown RBP19.4■□□□□ 0.7
SQSTM1-216ENST00000626660 CHST14Q8NCH0 376 aa19.4■□□□□ 0.7
SQSTM1-216ENST00000626660 TMIEQ8NEW7 156 aa19.4■□□□□ 0.7
SQSTM1-216ENST00000626660 PIP4K2CQ8TBX8 421 aa19.4■□□□□ 0.7
SQSTM1-216ENST00000626660 GRIN3AQ8TCU5 1115 aa19.4■□□□□ 0.7
SQSTM1-216ENST00000626660 TFB1MQ8WVM0 346 aaKnown RBP19.4■□□□□ 0.7
SQSTM1-216ENST00000626660 MAML1Q92585 1016 aa19.4■□□□□ 0.7
SQSTM1-216ENST00000626660 PSKH2Q96QS6 385 aa19.4■□□□□ 0.7
SQSTM1-216ENST00000626660 PHOX2BQ99453 314 aa19.4■□□□□ 0.7
SQSTM1-216ENST00000626660 ZDHHC6Q9H6R6 413 aa19.4■□□□□ 0.7
SQSTM1-216ENST00000626660 EML5Q05BV3 1969 aa19.4■□□□□ 0.7
SQSTM1-216ENST00000626660 FANCMQ8IYD8 2048 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 HACD1B0YJ81 288 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 H7C0C1 242 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 CCNB1P14635 433 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 C5AR1P21730 350 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 SLC8A1P32418 973 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 CNR2P34972 360 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 ATP5OP48047 213 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 OTUD4Q01804 1114 aaKnown RBP19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 TCF15Q12870 199 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 XRCC4Q13426 336 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 NOMO1Q15155 1222 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 ZC3H18Q86VM9 953 aaKnown RBP19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 ZBTB44Q8NCP5 570 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 OR6K2Q8NGY2 324 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 ACTL9Q8TC94 416 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 GANCQ8TET4 914 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 LRIG1Q96JA1 1093 aa19.39■□□□□ 0.69
SQSTM1-216ENST00000626660 EXOC2Q96KP1 924 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms