RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 FARP1Q9Y4F1 1045 aaPredicted RBP16.5■□□□□ 0.23
LSM4-206ENST00000600289 ANKRD36A6QL64 1941 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 RASA4BC9J798 803 aa16.49■□□□□ 0.23
LSM4-206ENST00000600289 C1QTNF3-AMACRE9PGA6 284 aa16.49■□□□□ 0.23
LSM4-206ENST00000600289 RASA4O43374 803 aa16.49■□□□□ 0.23
LSM4-206ENST00000600289 SEMA4FO95754 770 aa16.49■□□□□ 0.23
LSM4-206ENST00000600289 IL1BP01584 269 aa16.49■□□□□ 0.23
LSM4-206ENST00000600289 RARAP10276 462 aa16.49■□□□□ 0.23
LSM4-206ENST00000600289 GOT1P17174 413 aa16.49■□□□□ 0.23
LSM4-206ENST00000600289 ITPKAP23677 461 aa16.49■□□□□ 0.23
LSM4-206ENST00000600289 CDC25BP30305 580 aa16.49■□□□□ 0.23
LSM4-206ENST00000600289 PSMD8P48556 350 aa16.49■□□□□ 0.23
LSM4-206ENST00000600289 SERINC3Q13530 473 aa16.49■□□□□ 0.23
LSM4-206ENST00000600289 INO80DQ53TQ3 878 aaPredicted RBP16.49■□□□□ 0.23
LSM4-206ENST00000600289 AADATQ8N5Z0 425 aa16.49■□□□□ 0.23
LSM4-206ENST00000600289 LZTR1Q8N653 840 aa16.49■□□□□ 0.23
LSM4-206ENST00000600289 TMIEQ8NEW7 156 aa16.49■□□□□ 0.23
LSM4-206ENST00000600289 PIGKQ92643 395 aa16.49■□□□□ 0.23
LSM4-206ENST00000600289 TMEM74BQ9NUR3 256 aa16.49■□□□□ 0.23
LSM4-206ENST00000600289 CWC15Q9P013 229 aaKnown RBP16.49■□□□□ 0.23
LSM4-206ENST00000600289 SERGEFQ9UGK8 458 aa16.49■□□□□ 0.23
LSM4-206ENST00000600289 SUSD2Q9UGT4 822 aa16.49■□□□□ 0.23
LSM4-206ENST00000600289 A0A1W2PP55 124 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 H3BRJ5 948 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 GSRP00390 522 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 PRNPP04156 253 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 ERCC2P18074 760 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 CHRNA3P32297 505 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 DRD3P35462 400 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 ARHGAP25P42331 645 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 NOVA1P51513 510 aaKnown RBP16.48■□□□□ 0.23
LSM4-206ENST00000600289 HADHQ16836 314 aaKnown RBP16.48■□□□□ 0.23
LSM4-206ENST00000600289 PPP6R3Q5H9R7 873 aaPredicted RBP16.48■□□□□ 0.23
LSM4-206ENST00000600289 KCNT1Q5JUK3 1230 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 DCAF12L1Q5VU92 463 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 POLNQ7Z5Q5 900 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 FAM124AQ86V42 546 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 PIP4K2CQ8TBX8 421 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 RFFLQ8WZ73 363 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 TSC1Q92574 1164 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 HMCESQ96FZ2 354 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 OMDQ99983 421 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 KDM4CQ9H3R0 1056 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 OSGEPQ9NPF4 335 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.48■□□□□ 0.23
LSM4-206ENST00000600289 SARDHQ9UL12 918 aa16.48■□□□□ 0.23
LSM4-206ENST00000600289 TPX2Q9ULW0 747 aaKnown RBP16.48■□□□□ 0.23
LSM4-206ENST00000600289 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.48■□□□□ 0.23
LSM4-206ENST00000600289 CACNA1EQ15878 2313 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 MEI4A8MW99 385 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 KHNYNO15037 678 aaKnown RBP16.47■□□□□ 0.23
LSM4-206ENST00000600289 DAPK3O43293 454 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 RNASEH2AO75792 299 aaKnown RBP16.47■□□□□ 0.23
LSM4-206ENST00000600289 CTSLP07711 333 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 ARL4AP40617 200 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 RECQLP46063 649 aaPredicted RBP16.47■□□□□ 0.23
LSM4-206ENST00000600289 ARSEP51690 589 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 HADHBP55084 474 aaKnown RBP16.47■□□□□ 0.23
LSM4-206ENST00000600289 DUOXA1Q1HG43 343 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 SMTNL2Q2TAL5 461 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 CARD16Q5EG05 197 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 TXNRD3NBQ6F5E7 133 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 ARHGAP12Q8IWW6 846 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 HDDC3Q8N4P3 179 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 DEFB119Q8N690 84 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 SLC35G2Q8TBE7 412 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 LRIG1Q96JA1 1093 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 SCNM1Q9BWG6 230 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 NEUROG2Q9H2A3 272 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 SMOC1Q9H4F8 434 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 C6orf106Q9H6K1 298 aaPredicted RBP16.47■□□□□ 0.23
LSM4-206ENST00000600289 PDFQ9HBH1 243 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 PCDH18Q9HCL0 1135 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 IL36AQ9UHA7 158 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 WASF2Q9Y6W5 498 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 SHROOM3Q8TF72 1996 aa16.47■□□□□ 0.23
LSM4-206ENST00000600289 ATXN2Q99700 1313 aaKnown RBP16.46■□□□□ 0.23
LSM4-206ENST00000600289 LNP1A1A4G5 178 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 ARHGAP42A6NI28 874 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 LRRC72A6NJI9 287 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 PRAMEF11O60813 436 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 SERPINF2P08697 491 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 CYLC1P35663 651 aaPredicted RBP16.46■□□□□ 0.23
LSM4-206ENST00000600289 ADPRHP54922 357 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 TRIM61Q5EBN2 209 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 AGBL4Q5VU57 503 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 DPY19L3Q6ZPD9 716 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 TMTC1Q8IUR5 882 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 NPWQ8N729 165 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 OR2T34Q8NGX1 318 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 C1orf216Q8TAB5 229 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 HSPH1Q92598 858 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 CSPG4P5Q96PW8 444 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 NUSAP1Q9BXS6 441 aaKnown RBP16.46■□□□□ 0.23
LSM4-206ENST00000600289 SLC39A8Q9C0K1 460 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 TNKS2Q9H2K2 1166 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 CAPN10Q9HC96 672 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 IMPACTQ9P2X3 320 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 SLC6A14Q9UN76 642 aa16.46■□□□□ 0.23
LSM4-206ENST00000600289 FCF1Q9Y324 198 aaKnown RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms