RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 DTLQ9NZJ0 730 aa15.79■□□□□ 0.12
SS18-216ENST00000580751 BCCIPQ9P287 314 aaKnown RBP eCLIP15.79■□□□□ 0.12
SS18-216ENST00000580751 PCYOX1Q9UHG3 505 aa15.79■□□□□ 0.12
SS18-216ENST00000580751 HEY1Q9Y5J3 304 aa15.79■□□□□ 0.12
SS18-216ENST00000580751 NYNRINQ9P2P1 1898 aaKnown RBP15.78■□□□□ 0.12
SS18-216ENST00000580751 J3KR12 359 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 K7ERQ8 282 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 SMAD6O43541 496 aaKnown RBP15.78■□□□□ 0.12
SS18-216ENST00000580751 SIN3BO75182 1162 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 TMCC1O94876 653 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 CD160O95971 181 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 RECQLP46063 649 aaPredicted RBP15.78■□□□□ 0.12
SS18-216ENST00000580751 NRLP54845 237 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 CSTF1Q05048 431 aaKnown RBP15.78■□□□□ 0.12
SS18-216ENST00000580751 XRCC4Q13426 336 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 DHX34Q14147 1143 aaKnown RBP15.78■□□□□ 0.12
SS18-216ENST00000580751 RFTN1Q14699 578 aaPredicted RBP15.78■□□□□ 0.12
SS18-216ENST00000580751 PDK1Q15118 436 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 ZNF528Q3MIS6 628 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 TMCO4Q5TGY1 634 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 ANO7Q6IWH7 933 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 TIGD7Q6NT04 549 aaPredicted RBP15.78■□□□□ 0.12
SS18-216ENST00000580751 ARHGAP36Q6ZRI8 547 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 Q6ZVU0 165 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 DSG4Q86SJ6 1040 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 RASSF3Q86WH2 238 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 TP53INP2Q8IXH6 220 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 MAML2Q8IZL2 1156 aaPredicted RBP15.78■□□□□ 0.12
SS18-216ENST00000580751 GRK7Q8WTQ7 553 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 UBXN4Q92575 508 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 P3H4Q92791 437 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 AP1M1Q9BXS5 423 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 EBF1Q9UH73 591 aa15.78■□□□□ 0.12
SS18-216ENST00000580751 DRG1Q9Y295 367 aaKnown RBP15.78■□□□□ 0.12
SS18-216ENST00000580751 FCF1Q9Y324 198 aaKnown RBP15.78■□□□□ 0.12
SS18-216ENST00000580751 FARP1Q9Y4F1 1045 aaPredicted RBP15.78■□□□□ 0.12
SS18-216ENST00000580751 CCDC163A0A0D9SF12 145 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 PPP1R12AO14974 1030 aaPredicted RBP15.77■□□□□ 0.12
SS18-216ENST00000580751 ALOX15BO15296 676 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 MAFKO60675 156 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 RNASEH1O60930 286 aaKnown RBP15.77■□□□□ 0.12
SS18-216ENST00000580751 MAP3K6O95382 1288 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 TDGF1P13385 188 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 VAV1P15498 845 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 ZNF33AQ06730 810 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 LLGL1Q15334 1064 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 C9orf64Q5T6V5 341 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 TSSK4Q6SA08 328 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 LEKR1Q6ZMV7 388 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 PLPP6Q8IY26 295 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 BBS5Q8N3I7 341 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 MDGA1Q8NFP4 955 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 ATL2Q8NHH9 583 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 HMGB4Q8WW32 186 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 OR8D1Q8WZ84 308 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 PTPRN2Q92932 1015 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 FATE1Q969F0 183 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 MAGOHBQ96A72 148 aaKnown RBP15.77■□□□□ 0.12
SS18-216ENST00000580751 HAUS1Q96CS2 278 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 HDAC11Q96DB2 347 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 OLFM3Q96PB7 478 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 TSGA13Q96PP4 275 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 KCNH6Q9H252 994 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 MTG2Q9H4K7 406 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 ACTL7AQ9Y615 435 aa15.77■□□□□ 0.12
SS18-216ENST00000580751 TCRBV7S2A1N4TA0A589 114 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 FAM187AA6NFU0 413 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 HACD1B0YJ81 288 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 CTIFO43310 598 aaKnown RBP15.76■□□□□ 0.11
SS18-216ENST00000580751 LIASO43766 372 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 GSRP00390 522 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 ITGAVP06756 1048 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 GABRG2P18507 467 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 NDUFV2P19404 249 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 CCNCP24863 283 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 COILP38432 576 aaPredicted RBP15.76■□□□□ 0.11
SS18-216ENST00000580751 COPAP53621 1224 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 RHOAP61586 193 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 SNRPD1P62314 119 aaKnown RBP15.76■□□□□ 0.11
SS18-216ENST00000580751 ZBTB16Q05516 673 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 ADCY2Q08462 1091 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 SLC10A2Q12908 348 aaPredicted RBP15.76■□□□□ 0.11
SS18-216ENST00000580751 LBRQ14739 615 aaKnown RBP15.76■□□□□ 0.11
SS18-216ENST00000580751 NOMO1Q15155 1222 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 ZNF776Q68DI1 518 aaPredicted RBP15.76■□□□□ 0.11
SS18-216ENST00000580751 TMPRSS6Q8IU80 811 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 PGBD3Q8N328 593 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 CCNYQ8ND76 341 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 OR2AP1Q8NGE2 309 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 OR2A12Q8NGT7 310 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 SLC35B2Q8TB61 432 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 ERLEC1Q96DZ1 483 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 MRGPRX1Q96LB2 322 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 GDAP1L1Q96MZ0 367 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 HERPUD2Q9BSE4 406 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 CINPQ9BW66 212 aaPredicted RBP15.76■□□□□ 0.11
SS18-216ENST00000580751 MKRN2Q9H000 416 aaKnown RBP15.76■□□□□ 0.11
SS18-216ENST00000580751 RSPH9Q9H1X1 276 aaPredicted RBP15.76■□□□□ 0.11
SS18-216ENST00000580751 HAUS2Q9NVX0 235 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 SMARCAL1Q9NZC9 954 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms