RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 CPNE8Q86YQ8 564 aa19.85■□□□□ 0.77
SS18-209ENST00000578595 TBC1D3Q8IZP1 549 aaPredicted RBP19.85■□□□□ 0.77
SS18-209ENST00000578595 UMODL1-AS1Q8N2C9 162 aa19.85■□□□□ 0.77
SS18-209ENST00000578595 SLC35G2Q8TBE7 412 aa19.85■□□□□ 0.77
SS18-209ENST00000578595 TEKT4Q8WW24 435 aa19.85■□□□□ 0.77
SS18-209ENST00000578595 PPP1R16AQ96I34 528 aa19.85■□□□□ 0.77
SS18-209ENST00000578595 KLC2Q9H0B6 622 aa19.85■□□□□ 0.77
SS18-209ENST00000578595 PCED1AQ9H1Q7 454 aa19.85■□□□□ 0.77
SS18-209ENST00000578595 SP110Q9HB58 689 aa19.85■□□□□ 0.77
SS18-209ENST00000578595 HECAQ9UBI9 543 aaPredicted RBP19.85■□□□□ 0.77
SS18-209ENST00000578595 UBA2Q9UBT2 640 aaPredicted RBP19.85■□□□□ 0.77
SS18-209ENST00000578595 EVLQ9UI08 416 aaPredicted RBP19.85■□□□□ 0.77
SS18-209ENST00000578595 LCMT1Q9UIC8 334 aa19.85■□□□□ 0.77
SS18-209ENST00000578595 PPM1HQ9ULR3 514 aa19.85■□□□□ 0.77
SS18-209ENST00000578595 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.85■□□□□ 0.77
SS18-209ENST00000578595 DMXL1Q9Y485 3027 aa19.85■□□□□ 0.77
SS18-209ENST00000578595 PCDH15Q96QU1 1955 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 SPTBN2O15020 2390 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 KRIT1O00522 736 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 LEFTY1O75610 366 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 ENGP17813 658 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 AMPD1P23109 780 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 DRD3P35462 400 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 CYLC1P35663 651 aaPredicted RBP19.84■□□□□ 0.77
SS18-209ENST00000578595 ADPRHP54922 357 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 SERINC3Q13530 473 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 SPA17Q15506 151 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 UAP1L1Q3KQV9 507 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 TMCO3Q6UWJ1 677 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 RHOT2Q8IXI1 618 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 OR2T34Q8NGX1 318 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 RFFLQ8WZ73 363 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 BIRC7Q96CA5 298 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 HEPHQ9BQS7 1158 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 CALN1Q9BXU9 219 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 SLC39A8Q9C0K1 460 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 PCDH18Q9HCL0 1135 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 LUC7LQ9NQ29 371 aaKnown RBP19.84■□□□□ 0.77
SS18-209ENST00000578595 SLC6A14Q9UN76 642 aa19.84■□□□□ 0.77
SS18-209ENST00000578595 A0A1B0GTW7 788 aa19.83■□□□□ 0.77
SS18-209ENST00000578595 IPO7O95373 1038 aaKnown RBP19.83■□□□□ 0.77
SS18-209ENST00000578595 IGSF6O95976 241 aa19.83■□□□□ 0.77
SS18-209ENST00000578595 SERPINF2P08697 491 aa19.83■□□□□ 0.77
SS18-209ENST00000578595 TNNT1P13805 278 aa19.83■□□□□ 0.77
SS18-209ENST00000578595 MAGEA1P43355 309 aa19.83■□□□□ 0.77
SS18-209ENST00000578595 NOP2P46087 812 aaKnown RBP19.83■□□□□ 0.77
SS18-209ENST00000578595 PAPOLAP51003 745 aaKnown RBP19.83■□□□□ 0.77
SS18-209ENST00000578595 CCDC15Q0P6D6 951 aa19.83■□□□□ 0.77
SS18-209ENST00000578595 PUM1Q14671 1186 aaKnown RBP eCLIP19.83■□□□□ 0.77
SS18-209ENST00000578595 ATXN7L2Q5T6C5 722 aaPredicted RBP19.83■□□□□ 0.77
SS18-209ENST00000578595 STPG1Q5TH74 334 aa19.83■□□□□ 0.77
SS18-209ENST00000578595 SLC23A3Q6PIS1 610 aa19.83■□□□□ 0.77
SS18-209ENST00000578595 ADAT2Q7Z6V5 191 aaKnown RBP19.83■□□□□ 0.77
SS18-209ENST00000578595 SPC24Q8NBT2 197 aa19.83■□□□□ 0.77
SS18-209ENST00000578595 OR2AP1Q8NGE2 309 aa19.83■□□□□ 0.77
SS18-209ENST00000578595 ARRDC3Q96B67 414 aa19.83■□□□□ 0.77
SS18-209ENST00000578595 EXOC2Q96KP1 924 aa19.83■□□□□ 0.77
SS18-209ENST00000578595 GDAP1L1Q96MZ0 367 aa19.83■□□□□ 0.77
SS18-209ENST00000578595 CSPG4P5Q96PW8 444 aa19.83■□□□□ 0.77
SS18-209ENST00000578595 LRRC19Q9H756 370 aa19.83■□□□□ 0.77
SS18-209ENST00000578595 TMEM9BQ9NQ34 198 aa19.83■□□□□ 0.77
SS18-209ENST00000578595 C4orf47A7E2U8 309 aa19.82■□□□□ 0.76
SS18-209ENST00000578595 GOLGA6L6A8MZA4 724 aa19.82■□□□□ 0.76
SS18-209ENST00000578595 BCAT2O15382 392 aaPredicted RBP19.82■□□□□ 0.76
SS18-209ENST00000578595 CD160O95971 181 aa19.82■□□□□ 0.76
SS18-209ENST00000578595 GSRP00390 522 aa19.82■□□□□ 0.76
SS18-209ENST00000578595 MAT2AP31153 395 aaKnown RBP19.82■□□□□ 0.76
SS18-209ENST00000578595 GKP32189 559 aa19.82■□□□□ 0.76
SS18-209ENST00000578595 HCAR3P49019 387 aa19.82■□□□□ 0.76
SS18-209ENST00000578595 RAD51Q06609 339 aa19.82■□□□□ 0.76
SS18-209ENST00000578595 DPYSQ14117 519 aa19.82■□□□□ 0.76
SS18-209ENST00000578595 ODF2Q5BJF6 829 aa19.82■□□□□ 0.76
SS18-209ENST00000578595 PEAR1Q5VY43 1037 aaPredicted RBP19.82■□□□□ 0.76
SS18-209ENST00000578595 POLNQ7Z5Q5 900 aa19.82■□□□□ 0.76
SS18-209ENST00000578595 NPWQ8N729 165 aa19.82■□□□□ 0.76
SS18-209ENST00000578595 PAF1Q8N7H5 531 aa19.82■□□□□ 0.76
SS18-209ENST00000578595 KCTD6Q8NC69 237 aa19.82■□□□□ 0.76
SS18-209ENST00000578595 TMIEQ8NEW7 156 aa19.82■□□□□ 0.76
SS18-209ENST00000578595 CASKIN2Q8WXE0 1202 aa19.82■□□□□ 0.76
SS18-209ENST00000578595 DNASE2BQ8WZ79 361 aa19.82■□□□□ 0.76
SS18-209ENST00000578595 ISG20Q96AZ6 181 aaKnown RBP19.82■□□□□ 0.76
SS18-209ENST00000578595 MFHAS1Q9Y4C4 1052 aa19.82■□□□□ 0.76
SS18-209ENST00000578595 J3KR12 359 aa19.81■□□□□ 0.76
SS18-209ENST00000578595 SLC7A4O43246 635 aa19.81■□□□□ 0.76
SS18-209ENST00000578595 ZNF821O75541 412 aaPredicted RBP19.81■□□□□ 0.76
SS18-209ENST00000578595 SYPP08247 313 aa19.81■□□□□ 0.76
SS18-209ENST00000578595 KRT7P08729 469 aa19.81■□□□□ 0.76
SS18-209ENST00000578595 C7P10643 843 aa19.81■□□□□ 0.76
SS18-209ENST00000578595 MAN1A1P33908 653 aa19.81■□□□□ 0.76
SS18-209ENST00000578595 SERPINB6P35237 376 aa19.81■□□□□ 0.76
SS18-209ENST00000578595 TAS2R40P59535 323 aa19.81■□□□□ 0.76
SS18-209ENST00000578595 MMRN1Q13201 1228 aa19.81■□□□□ 0.76
SS18-209ENST00000578595 TEAD4Q15561 434 aa19.81■□□□□ 0.76
SS18-209ENST00000578595 ATP13A4Q4VNC1 1196 aa19.81■□□□□ 0.76
SS18-209ENST00000578595 AGBL4Q5VU57 503 aa19.81■□□□□ 0.76
SS18-209ENST00000578595 FBXL19Q6PCT2 694 aa19.81■□□□□ 0.76
SS18-209ENST00000578595 CCDC170Q8IYT3 715 aa19.81■□□□□ 0.76
SS18-209ENST00000578595 LZTR1Q8N653 840 aa19.81■□□□□ 0.76
SS18-209ENST00000578595 PANX2Q96RD6 677 aa19.81■□□□□ 0.76
SS18-209ENST00000578595 RTKNQ9BST9 563 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms