RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 SEC24CP53992 1094 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 SUMO3P55854 103 aaPredicted RBP6.4□□□□□ -1.38
VPS53-212ENST00000572259 MC1RQ01726 317 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 MEF2AQ02078 507 aaPredicted RBP6.4□□□□□ -1.38
VPS53-212ENST00000572259 TMED1Q13445 227 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 LETM2Q2VYF4 491 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 FLYWCH1Q4VC44 716 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 KRT40Q6A162 431 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 KRTAP5-3Q6L8H2 238 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 ABHD15Q6UXT9 468 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 PIK3AP1Q6ZUJ8 805 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 ZNF365Q70YC5 407 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 LRRC8DQ7L1W4 858 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 SLFN11Q7Z7L1 901 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 SERINC5Q86VE9 423 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 GATAD2AQ86YP4 633 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 ARMC8Q8IUR7 673 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 EGFL6Q8IUX8 553 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 SLC44A2Q8IWA5 706 aaPredicted RBP6.4□□□□□ -1.38
VPS53-212ENST00000572259 SPC24Q8NBT2 197 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 GSDMBQ8TAX9 411 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 GDAP1Q8TB36 358 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 KAT5Q92993 513 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 SLC7A6OSQ96CW6 309 aaPredicted RBP6.4□□□□□ -1.38
VPS53-212ENST00000572259 MBD6Q96DN6 1003 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 C7orf25Q9BPX7 421 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 TRIM6Q9C030 488 aaPredicted RBP6.4□□□□□ -1.38
VPS53-212ENST00000572259 ERVK-5Q9HDB9 667 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 SETD4Q9NVD3 440 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 IGSF9Q9P2J2 1179 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 CPNE7Q9UBL6 633 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 CHORDC1Q9UHD1 332 aaPredicted RBP6.4□□□□□ -1.38
VPS53-212ENST00000572259 DDX25Q9UHL0 483 aaKnown RBP6.4□□□□□ -1.38
VPS53-212ENST00000572259 DUSP12Q9UNI6 340 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 NR2E1Q9Y466 385 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 SCN5AQ14524 2016 aa6.4□□□□□ -1.39
VPS53-212ENST00000572259 LAMA2P24043 3122 aaKnown RBP6.39□□□□□ -1.39
VPS53-212ENST00000572259 LOXHD1Q8IVV2 1947 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 CCDC78A2IDD5 438 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 FAM234BA2RU67 622 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 C2orf78A6NCI8 922 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 HMX3A6NHT5 357 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 H3BQV1 296 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 MSH4O15457 936 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 MAGEB2O15479 319 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 AKR1B10O60218 316 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 NOBOXO60393 691 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 JAK2O60674 1132 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 LARGE1O95461 756 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 GUCA1CO95843 209 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 TK1P04183 234 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 FDPSP14324 419 aaKnown RBP6.39□□□□□ -1.39
VPS53-212ENST00000572259 INSRRP14616 1297 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 JUPP14923 745 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 TGM1P22735 817 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 PSMA4P25789 261 aaKnown RBP6.39□□□□□ -1.39
VPS53-212ENST00000572259 TMOD1P28289 359 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 HADHAP40939 763 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 SLC12A2P55011 1212 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 ATP2C1P98194 919 aaPredicted RBP6.39□□□□□ -1.39
VPS53-212ENST00000572259 CDC42EP1Q00587 391 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 LRMPQ12912 555 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 EPS8Q12929 822 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 ITGB3BPQ13352 177 aaPredicted RBP6.39□□□□□ -1.39
VPS53-212ENST00000572259 ORC2Q13416 577 aaPredicted RBP6.39□□□□□ -1.39
VPS53-212ENST00000572259 MAMLD1Q13495 774 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 SEMA3AQ14563 771 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 NOMO1Q15155 1222 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 ZNF484Q5JVG2 852 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 ARL6IP4Q66PJ3 421 aaKnown RBP6.39□□□□□ -1.39
VPS53-212ENST00000572259 KLHL10Q6JEL2 608 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 TAS1R1Q7RTX1 841 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 MIER3Q7Z3K6 550 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 R3HCC1LQ7Z5L2 792 aaKnown RBP6.39□□□□□ -1.39
VPS53-212ENST00000572259 DEFB128Q7Z7B8 93 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 CLEC14AQ86T13 490 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 CEP97Q8IW35 865 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 DIS3L2Q8IYB7 885 aaKnown RBP6.39□□□□□ -1.39
VPS53-212ENST00000572259 THNSL1Q8IYQ7 743 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 LGI4Q8N135 537 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 KCTD6Q8NC69 237 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 PIK3C3Q8NEB9 887 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 GPR156Q8NFN8 814 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 FBXO18Q8NFZ0 1043 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 OR14K1Q8NGZ2 314 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 MOSPD2Q8NHP6 518 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 UTP15Q8TED0 518 aaKnown RBP6.39□□□□□ -1.39
VPS53-212ENST00000572259 STON2Q8WXE9 905 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 NMD3Q96D46 503 aaKnown RBP6.39□□□□□ -1.39
VPS53-212ENST00000572259 FAM120BQ96EK7 910 aaKnown RBP6.39□□□□□ -1.39
VPS53-212ENST00000572259 MOGAT1Q96PD6 335 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 FOXP1Q9H334 677 aaPredicted RBP6.39□□□□□ -1.39
VPS53-212ENST00000572259 RXFP3Q9NSD7 469 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 RBM12Q9NTZ6 932 aaKnown RBP6.39□□□□□ -1.39
VPS53-212ENST00000572259 LMBRD1Q9NUN5 540 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 MOSPD1Q9UJG1 213 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 TUBE1Q9UJT0 475 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 CLCA2Q9UQC9 943 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 SMC3Q9UQE7 1217 aa6.39□□□□□ -1.39
VPS53-212ENST00000572259 COL1A2P08123 1366 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms