RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 PSKH2Q96QS6 385 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 CEP44Q9C0F1 390 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 SLC6A17Q9H1V8 727 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 TNKS2Q9H2K2 1166 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 CD93Q9NPY3 652 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 PRMT8Q9NR22 394 aaPredicted RBP9.45□□□□□ -0.9
VPS35-211ENST00000569950 DONSONQ9NYP3 566 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 UBA2Q9UBT2 640 aaPredicted RBP9.45□□□□□ -0.9
VPS35-211ENST00000569950 SARDHQ9UL12 918 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 ATP8A1Q9Y2Q0 1164 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 NEU2Q9Y3R4 380 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 GON4LQ3T8J9 2241 aa9.45□□□□□ -0.9
VPS35-211ENST00000569950 BCLAF3A2AJT9 711 aaKnown RBP9.44□□□□□ -0.9
VPS35-211ENST00000569950 CTAGE9A4FU28 777 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 ZSCAN5CA6NGD5 496 aaPredicted RBP9.44□□□□□ -0.9
VPS35-211ENST00000569950 NCAM2O15394 837 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 SPINT1O43278 529 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 GSRP00390 522 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 RBP3P10745 1247 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 HOXB2P14652 356 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 TCP1P17987 556 aaKnown RBP9.44□□□□□ -0.9
VPS35-211ENST00000569950 GABRG2P18507 467 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 RBL1P28749 1068 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 AVPR2P30518 371 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 GKP32189 559 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 DMWDQ09019 674 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 HNRNPDQ14103 355 aaKnown RBP9.44□□□□□ -0.9
VPS35-211ENST00000569950 LBRQ14739 615 aaKnown RBP9.44□□□□□ -0.9
VPS35-211ENST00000569950 PDK1Q15118 436 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 FNDC3BQ53EP0 1204 aaKnown RBP9.44□□□□□ -0.9
VPS35-211ENST00000569950 SEL1L2Q5TEA6 688 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 DRICH1Q6PGQ1 229 aaPredicted RBP9.44□□□□□ -0.9
VPS35-211ENST00000569950 SERPINA13PQ6UXR4 307 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 DPY19L3Q6ZPD9 716 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 ZNF572Q7Z3I7 529 aaPredicted RBP9.44□□□□□ -0.9
VPS35-211ENST00000569950 RASSF3Q86WH2 238 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 ZSWIM9Q86XI8 627 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 CCDC117Q8IWD4 279 aaPredicted RBP9.44□□□□□ -0.9
VPS35-211ENST00000569950 CCDC13Q8IYE1 715 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 CHPFQ8IZ52 775 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 STK40Q8N2I9 435 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 PCDH20Q8N6Y1 951 aaKnown RBP9.44□□□□□ -0.9
VPS35-211ENST00000569950 C12orf50Q8NA57 414 aaPredicted RBP9.44□□□□□ -0.9
VPS35-211ENST00000569950 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.44□□□□□ -0.9
VPS35-211ENST00000569950 CASKIN2Q8WXE0 1202 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 P3H4Q92791 437 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 RTP4Q96DX8 246 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 EXOC2Q96KP1 924 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 MGME1Q9BQP7 344 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 MAK16Q9BXY0 300 aaKnown RBP9.44□□□□□ -0.9
VPS35-211ENST00000569950 CEP41Q9BYV8 373 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 RSPH9Q9H1X1 276 aaPredicted RBP9.44□□□□□ -0.9
VPS35-211ENST00000569950 EBF1Q9UH73 591 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 SLC25A13Q9UJS0 675 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 PPM1HQ9ULR3 514 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 SDK1Q7Z5N4 2213 aa9.44□□□□□ -0.9
VPS35-211ENST00000569950 EDDM13A0A1B0GTR0 161 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 TARSL2A2RTX5 802 aaKnown RBP9.43□□□□□ -0.9
VPS35-211ENST00000569950 PRR33A8MZF0 331 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 HACD1B0YJ81 288 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 PGRMC1O00264 195 aaKnown RBP9.43□□□□□ -0.9
VPS35-211ENST00000569950 MCF2LO15068 1137 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 ZNF500O60304 480 aaPredicted RBP9.43□□□□□ -0.9
VPS35-211ENST00000569950 JCHAINP01591 159 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 EPHX1P07099 455 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 CCNB1P14635 433 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 NDUFV2P19404 249 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 MX2P20592 715 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 DRD3P35462 400 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 MAGEA9P43362 315 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 CSNK1DP48730 415 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 CCNHP51946 323 aaPredicted RBP9.43□□□□□ -0.9
VPS35-211ENST00000569950 EIF3EP60228 445 aaKnown RBP9.43□□□□□ -0.9
VPS35-211ENST00000569950 MAXP61244 160 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 RPS14P62263 151 aaKnown RBP9.43□□□□□ -0.9
VPS35-211ENST00000569950 RFTN1Q14699 578 aaPredicted RBP9.43□□□□□ -0.9
VPS35-211ENST00000569950 CCNG2Q16589 344 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 PRUNE1Q86TP1 453 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 PRPF39Q86UA1 669 aaKnown RBP9.43□□□□□ -0.9
VPS35-211ENST00000569950 ZNF567Q8N184 647 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 ATP11CQ8NB49 1132 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 DTWD2Q8NBA8 298 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 MDGA1Q8NFP4 955 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 OR2AP1Q8NGE2 309 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 OR6K2Q8NGY2 324 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 UCMAQ8WVF2 138 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 TFB1MQ8WVM0 346 aaKnown RBP9.43□□□□□ -0.9
VPS35-211ENST00000569950 HTR3CQ8WXA8 447 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 EXOC4Q96A65 974 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 MRGPRX1Q96LB2 322 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 TEKT5Q96M29 485 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 IER2Q9BTL4 223 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 LRFN3Q9BTN0 628 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 AP1M1Q9BXS5 423 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 TM6SF2Q9BZW4 377 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 BRD8Q9H0E9 1235 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 MFSD1Q9H3U5 465 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 SP110Q9HB58 689 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 SERGEFQ9UGK8 458 aa9.43□□□□□ -0.9
VPS35-211ENST00000569950 PLA2G4CQ9UP65 541 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms