RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 TMEM253P0C7T8 217 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 TBC1D3HP0C7X1 549 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 NUDT1P36639 197 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 SSR1P43307 286 aaKnown RBP13.64□□□□□ -0.23
CLK3-213ENST00000563842 AFF3P51826 1226 aaKnown RBP13.64□□□□□ -0.23
CLK3-213ENST00000563842 ADPRHP54922 357 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 RAD51Q06609 339 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 TBX2Q13207 712 aaPredicted RBP13.64□□□□□ -0.23
CLK3-213ENST00000563842 SERINC3Q13530 473 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 DPYSL2Q16555 572 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 CA9Q16790 459 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 TBC1D3GQ6DHY5 549 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 TBC1D3CQ6IPX1 549 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 IL27RAQ6UWB1 636 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 DPY19L3Q6ZPD9 716 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 TBC1D3Q8IZP1 549 aaPredicted RBP13.64□□□□□ -0.23
CLK3-213ENST00000563842 ZCCHC9Q8N567 271 aaKnown RBP13.64□□□□□ -0.23
CLK3-213ENST00000563842 FAM131CQ96AQ9 280 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 SKA1Q96BD8 255 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 ARHGEF26Q96DR7 871 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 CHP1Q99653 195 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 GTPBP2Q9BX10 602 aaKnown RBP13.64□□□□□ -0.23
CLK3-213ENST00000563842 NOL6Q9H6R4 1146 aaKnown RBP13.64□□□□□ -0.23
CLK3-213ENST00000563842 SARDHQ9UL12 918 aa13.64□□□□□ -0.23
CLK3-213ENST00000563842 FCF1Q9Y324 198 aaKnown RBP13.64□□□□□ -0.23
CLK3-213ENST00000563842 TMEM131Q92545 1883 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 LAMA1P25391 3075 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 ATRXP46100 2492 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 A0A1W2PPC4 97 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 CDX4O14627 284 aaPredicted RBP13.63□□□□□ -0.23
CLK3-213ENST00000563842 PLRG1O43660 514 aaKnown RBP13.63□□□□□ -0.23
CLK3-213ENST00000563842 OPHN1O60890 802 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 POP4O95707 220 aaKnown RBP13.63□□□□□ -0.23
CLK3-213ENST00000563842 CD160O95971 181 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 ERCC2P18074 760 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 CCNHP51946 323 aaPredicted RBP13.63□□□□□ -0.23
CLK3-213ENST00000563842 CNTN1Q12860 1018 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 ARSIQ5FYB1 569 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 NEK5Q6P3R8 708 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 CYP4V2Q6ZWL3 525 aaPredicted RBP13.63□□□□□ -0.23
CLK3-213ENST00000563842 PRPF39Q86UA1 669 aaKnown RBP13.63□□□□□ -0.23
CLK3-213ENST00000563842 RHOT2Q8IXI1 618 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 RYBPQ8N488 228 aaPredicted RBP13.63□□□□□ -0.23
CLK3-213ENST00000563842 CHST14Q8NCH0 376 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 OR2AP1Q8NGE2 309 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 HSPH1Q92598 858 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 HMCESQ96FZ2 354 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 MRFAP1L1Q96HT8 127 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 OSBPL1AQ9BXW6 950 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 RBSNQ9H1K0 784 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 LRRC19Q9H756 370 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 PREBQ9HCU5 417 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.63□□□□□ -0.23
CLK3-213ENST00000563842 CWC15Q9P013 229 aaKnown RBP13.63□□□□□ -0.23
CLK3-213ENST00000563842 HECAQ9UBI9 543 aaPredicted RBP13.63□□□□□ -0.23
CLK3-213ENST00000563842 INTUQ9ULD6 942 aa13.63□□□□□ -0.23
CLK3-213ENST00000563842 DCDC2BA2VCK2 349 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 ZNF821O75541 412 aaPredicted RBP13.62□□□□□ -0.23
CLK3-213ENST00000563842 LEFTY1O75610 366 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 PROSCO94903 275 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 CER1O95813 267 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 IGSF6O95976 241 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 IGHV4-34P06331 123 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 CTSLP07711 333 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 RARAP10276 462 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 IL1R2P27930 398 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 SERPINB6P35237 376 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 MAPK8P45983 427 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 GRIA4P48058 902 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 RHOAP61586 193 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 RACK1P63244 317 aaKnown RBP13.62□□□□□ -0.23
CLK3-213ENST00000563842 KRT81Q14533 505 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 GRM3Q14832 879 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 SMTNL2Q2TAL5 461 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 UAP1L1Q3KQV9 507 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 POM121L1PQ3SYA9 428 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 SLC45A4Q5BKX6 768 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 KCNT1Q5JUK3 1230 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 AGBL4Q5VU57 503 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 ERN2Q76MJ5 926 aaKnown RBP13.62□□□□□ -0.23
CLK3-213ENST00000563842 POLNQ7Z5Q5 900 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 ADAT2Q7Z6V5 191 aaKnown RBP13.62□□□□□ -0.23
CLK3-213ENST00000563842 MAP7D3Q8IWC1 876 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 MINDY1Q8N5J2 469 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 C1orf216Q8TAB5 229 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 GRIN3AQ8TCU5 1115 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 COL26A1Q96A83 441 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 BTBD6Q96KE9 485 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 GDAP1L1Q96MZ0 367 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 HDAC8Q9BY41 377 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 TM6SF2Q9BZW4 377 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 ZDHHC6Q9H6R6 413 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 TM9SF3Q9HD45 589 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 LUC7LQ9NQ29 371 aaKnown RBP13.62□□□□□ -0.23
CLK3-213ENST00000563842 RCOR3Q9P2K3 495 aaPredicted RBP13.62□□□□□ -0.23
CLK3-213ENST00000563842 UBA2Q9UBT2 640 aaPredicted RBP13.62□□□□□ -0.23
CLK3-213ENST00000563842 WASF2Q9Y6W5 498 aa13.62□□□□□ -0.23
CLK3-213ENST00000563842 SPTBN2O15020 2390 aa13.61□□□□□ -0.23
CLK3-213ENST00000563842 TM4SF5O14894 197 aa13.61□□□□□ -0.23
CLK3-213ENST00000563842 PRAMEF11O60813 436 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms