RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 PABPC1P11940 636 aaKnown RBP5.53□□□□□ -1.52
VPS13C-209ENST00000560637 GFAPP14136 432 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 PAX3P23760 479 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 SERPINA4P29622 427 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 DGKEP52429 567 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 PLK1P53350 603 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 COPS2P61201 443 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 SNRPD1P62314 119 aaKnown RBP5.53□□□□□ -1.52
VPS13C-209ENST00000560637 AAK1Q2M2I8 961 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 SYTL3Q4VX76 610 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 TAF1BQ53T94 588 aaPredicted RBP5.53□□□□□ -1.52
VPS13C-209ENST00000560637 PIK3R6Q5UE93 754 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 MBLAC2Q68D91 279 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 FAM171BQ6P995 826 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.53□□□□□ -1.52
VPS13C-209ENST00000560637 TRAPPC5Q8IUR0 188 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 ZNF567Q8N184 647 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 LZTR1Q8N653 840 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 MDM1Q8TC05 714 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 HERVK_113Q902F9 699 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 SPATA13Q96N96 652 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 KLHL32Q96NJ5 620 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 ZIM3Q96PE6 472 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 CYTH2Q99418 400 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 NDNQ99608 321 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 OSBPL6Q9BZF3 934 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 ANKZF1Q9H8Y5 726 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 PCDH9Q9HC56 1237 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 TBC1D14Q9P2M4 693 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 TMEM59LQ9UK28 342 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 AAR2Q9Y312 384 aaKnown RBP5.53□□□□□ -1.52
VPS13C-209ENST00000560637 ASB3Q9Y575 518 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 PCDHA11Q9Y5I1 949 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 BACE2Q9Y5Z0 518 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 A0A087WUV0 522 aaPredicted RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 PHGDHO43175 533 aaKnown RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 SLC34A2O95436 690 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 METTL18O95568 372 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 CYP11A1P05108 521 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 RB1P06400 928 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 RHOQP17081 205 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 HSD17B3P37058 310 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 CASP2P42575 452 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 MAPK9P45984 424 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 DDX39BQ13838 428 aaKnown RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 ZRSR2Q15696 482 aaKnown RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 ZNF284Q2VY69 593 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 SGO1Q5FBB7 561 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 PRAMEF14Q5SWL7 426 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 SLC8B1Q6J4K2 584 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 STRA8Q7Z7C7 330 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 CPA6Q8N4T0 437 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 RTL3Q8N8U3 475 aaKnown RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 SHKBP1Q8TBC3 707 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 KCTD13Q8WZ19 329 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 IRGQQ8WZA9 623 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 HERC2P3Q9BVR0 1158 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 ADGRE3Q9BY15 652 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 TPSD1Q9BZJ3 242 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 ZBP1Q9H171 429 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 SFXN1Q9H9B4 322 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 L2HGDHQ9H9P8 463 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 FBXO6Q9NRD1 293 aaPredicted RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 HEBP1Q9NRV9 189 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 SLC17A6Q9P2U8 582 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 GGT7Q9UJ14 662 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 DCTN4Q9UJW0 460 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 SCN1AP35498 2009 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 IQANK1A0A1B0GTG1 560 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 OR51F1A6NGY5 319 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 ERI2A8K979 691 aaKnown RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 DNALI1O14645 258 aaPredicted RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 FSCN2O14926 492 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 FANCGO15287 622 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 CLASP2O75122 1294 aaKnown RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 SRP72O76094 671 aaKnown RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 TMCC1O94876 653 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 FSBPO95073 299 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 STAU1O95793 577 aaKnown RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 GUCA1CO95843 209 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 DNAJB1P25685 340 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 ERVK-21P61565 698 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 SLC25A11Q02978 314 aaKnown RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 HSPA14Q0VDF9 509 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 PLA2G4EQ3MJ16 856 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 LRRC38Q5VT99 294 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 RAET1GQ6H3X3 334 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 ZNF449Q6P9G9 518 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 CRTC3Q6UUV7 619 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 TBC1D1Q86TI0 1168 aaPredicted RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 APCDD1Q8J025 514 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 MMGT1Q8N4V1 131 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 ZNF513Q8N8E2 541 aaPredicted RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 SPDYE1Q8NFV5 336 aaPredicted RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 PHOSPHO2Q8TCD6 241 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 LRRC8CQ8TDW0 803 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 FNIP1Q8TF40 1166 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 C2orf15Q8WU43 125 aaKnown RBP5.52□□□□□ -1.53
VPS13C-209ENST00000560637 MFSD3Q96ES6 412 aa5.52□□□□□ -1.53
VPS13C-209ENST00000560637 CHMP6Q96FZ7 201 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms