RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 CARD16Q5EG05 197 aa22.03■■□□□ 1.12
SNX1-206ENST00000559389 DPY19L3Q6ZPD9 716 aa22.03■■□□□ 1.12
SNX1-206ENST00000559389 SLC13A5Q86YT5 568 aaPredicted RBP22.03■■□□□ 1.12
SNX1-206ENST00000559389 TMPRSS6Q8IU80 811 aa22.03■■□□□ 1.12
SNX1-206ENST00000559389 TEX26Q8N6G2 289 aa22.03■■□□□ 1.12
SNX1-206ENST00000559389 CHST14Q8NCH0 376 aa22.03■■□□□ 1.12
SNX1-206ENST00000559389 CCNYQ8ND76 341 aa22.03■■□□□ 1.12
SNX1-206ENST00000559389 NSMCE1Q8WV22 266 aa22.03■■□□□ 1.12
SNX1-206ENST00000559389 QKIQ96PU8 341 aaKnown RBP eCLIP22.03■■□□□ 1.126e-10■■□□□ 13.4
SNX1-206ENST00000559389 PSKH2Q96QS6 385 aa22.03■■□□□ 1.12
SNX1-206ENST00000559389 FAM129BQ96TA1 746 aa22.03■■□□□ 1.12
SNX1-206ENST00000559389 PRRX2Q99811 253 aa22.03■■□□□ 1.12
SNX1-206ENST00000559389 MUSKO15146 869 aa22.02■■□□□ 1.12
SNX1-206ENST00000559389 ZBTB24O43167 697 aaPredicted RBP22.02■■□□□ 1.12
SNX1-206ENST00000559389 IGSF6O95976 241 aa22.02■■□□□ 1.12
SNX1-206ENST00000559389 CXCR5P32302 372 aa22.02■■□□□ 1.12
SNX1-206ENST00000559389 MMP13P45452 471 aa22.02■■□□□ 1.12
SNX1-206ENST00000559389 RPS14P62263 151 aaKnown RBP22.02■■□□□ 1.12
SNX1-206ENST00000559389 IFI35P80217 286 aaPredicted RBP22.02■■□□□ 1.12
SNX1-206ENST00000559389 XRCC4Q13426 336 aa22.02■■□□□ 1.12
SNX1-206ENST00000559389 HNRNPDQ14103 355 aaKnown RBP22.02■■□□□ 1.12
SNX1-206ENST00000559389 ZNF235Q14590 738 aa22.02■■□□□ 1.12
SNX1-206ENST00000559389 ATXN7L2Q5T6C5 722 aaPredicted RBP22.02■■□□□ 1.12
SNX1-206ENST00000559389 MARC1Q5VT66 337 aa22.02■■□□□ 1.12
SNX1-206ENST00000559389 KIAA1324Q6UXG2 1013 aaKnown RBP22.02■■□□□ 1.12
SNX1-206ENST00000559389 DSG4Q86SJ6 1040 aa22.02■■□□□ 1.12
SNX1-206ENST00000559389 CACUL1Q86Y37 369 aa22.02■■□□□ 1.12
SNX1-206ENST00000559389 TTC13Q8NBP0 860 aa22.02■■□□□ 1.12
SNX1-206ENST00000559389 TSEN2Q8NCE0 465 aaKnown RBP22.02■■□□□ 1.12
SNX1-206ENST00000559389 PRSS33Q8NF86 280 aa22.02■■□□□ 1.12
SNX1-206ENST00000559389 PRCCQ92733 491 aaPredicted RBP22.02■■□□□ 1.12
SNX1-206ENST00000559389 EXOC2Q96KP1 924 aa22.02■■□□□ 1.12
SNX1-206ENST00000559389 MGME1Q9BQP7 344 aa22.02■■□□□ 1.12
SNX1-206ENST00000559389 FAM126AQ9BYI3 521 aaPredicted RBP22.02■■□□□ 1.12
SNX1-206ENST00000559389 FARP1Q9Y4F1 1045 aaPredicted RBP22.02■■□□□ 1.12
SNX1-206ENST00000559389 CACNA1IQ9P0X4 2223 aa22.02■■□□□ 1.11
SNX1-206ENST00000559389 HACD1B0YJ81 288 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 AXIN1O15169 862 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 RNASEH1O60930 286 aaKnown RBP22.01■■□□□ 1.11
SNX1-206ENST00000559389 CTSLP07711 333 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 CHRNA3P32297 505 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 HSPA9P38646 679 aaKnown RBP22.01■■□□□ 1.11
SNX1-206ENST00000559389 RGRP47804 291 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 FNTBP49356 437 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 RENBPP51606 427 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 AP1B1Q10567 949 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 CST6Q15828 149 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 SLC45A4Q5BKX6 768 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 HEATR6Q6AI08 1181 aaKnown RBP22.01■■□□□ 1.11
SNX1-206ENST00000559389 ZC3H18Q86VM9 953 aaKnown RBP22.01■■□□□ 1.11
SNX1-206ENST00000559389 WDR5BQ86VZ2 330 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 PGBD3Q8N328 593 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 BBS5Q8N3I7 341 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 PGBD5Q8N414 524 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 TFB1MQ8WVM0 346 aaKnown RBP22.01■■□□□ 1.11
SNX1-206ENST00000559389 VOPP1Q96AW1 172 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 SIPA1Q96FS4 1042 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 TPSD1Q9BZJ3 242 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 PPM1HQ9ULR3 514 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 SNX12Q9UMY4 172 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 WASF2Q9Y6W5 498 aa22.01■■□□□ 1.11
SNX1-206ENST00000559389 EML5Q05BV3 1969 aa22■■□□□ 1.11
SNX1-206ENST00000559389 KCNK1O00180 336 aa22■■□□□ 1.11
SNX1-206ENST00000559389 FANCGO15287 622 aa22■■□□□ 1.11
SNX1-206ENST00000559389 CEP104O60308 925 aa22■■□□□ 1.11
SNX1-206ENST00000559389 CCNB1P14635 433 aa22■■□□□ 1.11
SNX1-206ENST00000559389 PSMD8P48556 350 aa22■■□□□ 1.11
SNX1-206ENST00000559389 NRLP54845 237 aa22■■□□□ 1.11
SNX1-206ENST00000559389 ZBTB16Q05516 673 aa22■■□□□ 1.11
SNX1-206ENST00000559389 ZBTB17Q13105 803 aa22■■□□□ 1.11
SNX1-206ENST00000559389 B4GALNT4Q76KP1 1039 aa22■■□□□ 1.11
SNX1-206ENST00000559389 LONP2Q86WA8 852 aa22■■□□□ 1.11
SNX1-206ENST00000559389 MMAAQ8IVH4 418 aaKnown RBP22■■□□□ 1.11
SNX1-206ENST00000559389 OR6K2Q8NGY2 324 aa22■■□□□ 1.11
SNX1-206ENST00000559389 GRIN3AQ8TCU5 1115 aa22■■□□□ 1.11
SNX1-206ENST00000559389 PBKQ96KB5 322 aa22■■□□□ 1.11
SNX1-206ENST00000559389 OSBPL9Q96SU4 736 aa22■■□□□ 1.11
SNX1-206ENST00000559389 FAM118BQ9BPY3 351 aa22■■□□□ 1.11
SNX1-206ENST00000559389 HEPHQ9BQS7 1158 aa22■■□□□ 1.11
SNX1-206ENST00000559389 USP36Q9P275 1121 aaKnown RBP22■■□□□ 1.11
SNX1-206ENST00000559389 HECAQ9UBI9 543 aaPredicted RBP22■■□□□ 1.11
SNX1-206ENST00000559389 IL36AQ9UHA7 158 aa22■■□□□ 1.11
SNX1-206ENST00000559389 R3HDM2Q9Y2K5 976 aaKnown RBP22■■□□□ 1.11
SNX1-206ENST00000559389 PLXND1Q9Y4D7 1925 aa22■■□□□ 1.11
SNX1-206ENST00000559389 C1QTNF3-AMACRE9PGA6 284 aa21.99■■□□□ 1.11
SNX1-206ENST00000559389 ADH1BP00325 375 aa21.99■■□□□ 1.11
SNX1-206ENST00000559389 IL1BP01584 269 aa21.99■■□□□ 1.11
SNX1-206ENST00000559389 PRNPP04156 253 aa21.99■■□□□ 1.11
SNX1-206ENST00000559389 CSNK1DP48730 415 aa21.99■■□□□ 1.11
SNX1-206ENST00000559389 EIF3EP60228 445 aaKnown RBP21.99■■□□□ 1.11
SNX1-206ENST00000559389 TCF15Q12870 199 aa21.99■■□□□ 1.11
SNX1-206ENST00000559389 CDKL3Q8IVW4 592 aaPredicted RBP21.99■■□□□ 1.11
SNX1-206ENST00000559389 RASGEF1CQ8N431 466 aa21.99■■□□□ 1.11
SNX1-206ENST00000559389 RYBPQ8N488 228 aaPredicted RBP21.99■■□□□ 1.11
SNX1-206ENST00000559389 IL12RB2Q99665 862 aa21.99■■□□□ 1.11
SNX1-206ENST00000559389 NAPGQ99747 312 aaPredicted RBP21.99■■□□□ 1.11
SNX1-206ENST00000559389 KCNH6Q9H252 994 aa21.99■■□□□ 1.11
SNX1-206ENST00000559389 PABPC3Q9H361 631 aaKnown RBP21.99■■□□□ 1.11
SNX1-206ENST00000559389 ZDHHC6Q9H6R6 413 aa21.99■■□□□ 1.11
SNX1-206ENST00000559389 CD93Q9NPY3 652 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms