RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 CXorf51AA0A1B0GTR3 108 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 KRIT1O00522 736 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 KCNN4O15554 427 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 LIASO43766 372 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 ZNF821O75541 412 aaPredicted RBP14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 URI1O94763 535 aaPredicted RBP14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 IGSF6O95976 241 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 CXCL12P48061 93 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 VASPP50552 380 aaPredicted RBP14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 CCR3P51677 355 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 DGKEP52429 567 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 SNRPD1P62314 119 aaKnown RBP14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 SIX1Q15475 284 aaPredicted RBP14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 CARD16Q5EG05 197 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 TMEM31Q5JXX7 168 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 C9orf64Q5T6V5 341 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 DPY19L3Q6ZPD9 716 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 PGBD3Q8N328 593 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 OR2A12Q8NGT7 310 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 GRIN3AQ8TCU5 1115 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 HMGB4Q8WW32 186 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 MAML1Q92585 1016 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 GDAP1L1Q96MZ0 367 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 AGAP3Q96P47 875 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 TMEM121Q9BTD3 319 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 SLC6A17Q9H1V8 727 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 BCCIPQ9P287 314 aaKnown RBP eCLIP14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 LHX3Q9UBR4 397 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 TTC7AQ9ULT0 858 aaPredicted RBP14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 ZNF148Q9UQR1 794 aa14.27□□□□□ -0.13
VIPAS39-208ENST00000556412 GOLGA6L10A0A0M3HER8 536 aa14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 TTC24A2A3L6 582 aaPredicted RBP14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 TARSL2A2RTX5 802 aaKnown RBP14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 RNF103O00237 685 aa14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 DLL1O00548 723 aa14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 MUSKO15146 869 aa14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 TUBB4AP04350 444 aa14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 AVPR2P30518 371 aa14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 GKP32189 559 aa14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 PAFAH1B1P43034 410 aa14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 RGRP47804 291 aa14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 PXNP49023 591 aaPredicted RBP14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 CCNHP51946 323 aaPredicted RBP14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 ZNF33AQ06730 810 aa14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 BYSLQ13895 437 aaKnown RBP14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 ANO7Q6IWH7 933 aa14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 CREG2Q8IUH2 290 aa14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 CHST14Q8NCH0 376 aa14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 OR2AP1Q8NGE2 309 aa14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 SLC35B2Q8TB61 432 aa14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 OR8D1Q8WZ84 308 aa14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 ISG20Q96AZ6 181 aaKnown RBP14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 ZNF419Q96HQ0 510 aaPredicted RBP14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 PSKH2Q96QS6 385 aa14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 IER2Q9BTL4 223 aa14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 ZDHHC6Q9H6R6 413 aa14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 KLHL8Q9P2G9 620 aaPredicted RBP14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 EVLQ9UI08 416 aaPredicted RBP14.26□□□□□ -0.13
VIPAS39-208ENST00000556412 PRR33A8MZF0 331 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 ESPNB1AK53 854 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 F5H423 210 aaPredicted RBP14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 MTSS1O43312 755 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 LAMTOR5O43504 91 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 RNASEH1O60930 286 aaKnown RBP14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 GJB3O75712 270 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 STK10O94804 968 aaKnown RBP14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 IL1BP01584 269 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 HLA-DQB2P05538 268 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 PTPN3P26045 913 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 SCNN1BP51168 640 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 NRLP54845 237 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 IFI35P80217 286 aaPredicted RBP14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 CAMK2GQ13555 558 aaPredicted RBP14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 ELAVL3Q14576 367 aaKnown RBP14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 CCNG2Q16589 344 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 POM121L1PQ3SYA9 428 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 KIAA1324Q6UXG2 1013 aaKnown RBP14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 MMAAQ8IVH4 418 aaKnown RBP14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 PGBD5Q8N414 524 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 PRELID2Q8N945 189 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 FAM71DQ8N9W8 422 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 DTWD2Q8NBA8 298 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 OR2T3Q8NH03 318 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 C1QTNF1Q9BXJ1 281 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 FRMD8P1Q9BZ68 369 aaPredicted RBP14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 HAUS2Q9NVX0 235 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 BCLAF3A2AJT9 711 aaKnown RBP14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 GPR37L1O60883 481 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 ALDH1A2O94788 518 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 GSRP00390 522 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 CHRNA3P32297 505 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 PSMD8P48556 350 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 WASHC5Q12768 1159 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 MYLK3Q32MK0 819 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 TSSK4Q6SA08 328 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 GSTA5Q7RTV2 222 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 DSG4Q86SJ6 1040 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 TEX26Q8N6G2 289 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 PAF1Q8N7H5 531 aa14.25□□□□□ -0.13
VIPAS39-208ENST00000556412 KIF18AQ8NI77 898 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms