RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 DAPK3O43293 454 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 LEFTY1O75610 366 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 PROSCO94903 275 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 PRNPP04156 253 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 ZNF135P52742 658 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-219ENST00000555563 NDST2P52849 883 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 PPP2CBP62714 309 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 PPP2CAP67775 309 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 BOLA3Q53S33 107 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 CARD16Q5EG05 197 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 ARSIQ5FYB1 569 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 AFMIDQ63HM1 303 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-219ENST00000555563 NETO2Q8NC67 525 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 TMIEQ8NEW7 156 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 OR6K2Q8NGY2 324 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 C1orf216Q8TAB5 229 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 ISG20Q96AZ6 181 aaKnown RBP13.97□□□□□ -0.17
SHMT2-219ENST00000555563 ARRDC3Q96B67 414 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 CNTNAP3BQ96NU0 1288 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 ORAI3Q9BRQ5 295 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 CNTNAP3Q9BZ76 1288 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 PDFQ9HBH1 243 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 DONSONQ9NYP3 566 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 MFHAS1Q9Y4C4 1052 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 ADAMTS9Q9P2N4 1935 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 PLXNA2O75051 1894 aa13.97□□□□□ -0.17
SHMT2-219ENST00000555563 PI4KAP42356 2102 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 DCDC2BA2VCK2 349 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 C4orf47A7E2U8 309 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 PLRG1O43660 514 aaKnown RBP13.96□□□□□ -0.17
SHMT2-219ENST00000555563 GSRP00390 522 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 CD27P26842 260 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 GJC1P36383 396 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 ARL4AP40617 200 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 SSR1P43307 286 aaKnown RBP13.96□□□□□ -0.17
SHMT2-219ENST00000555563 HCAR3P49019 387 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 GRIK2Q13002 908 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 ATXN7L2Q5T6C5 722 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-219ENST00000555563 PIP5KL1Q5T9C9 394 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 POLNQ7Z5Q5 900 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 ARHGAP12Q8IWW6 846 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 OR2AP1Q8NGE2 309 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 OR2I1PQ8NGU4 316 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 CSPG4P5Q96PW8 444 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 HEPHQ9BQS7 1158 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 GTPBP2Q9BX10 602 aaKnown RBP13.96□□□□□ -0.17
SHMT2-219ENST00000555563 SLC39A8Q9C0K1 460 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 ZDHHC6Q9H6R6 413 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 PCDH18Q9HCL0 1135 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 GON4LQ3T8J9 2241 aa13.96□□□□□ -0.17
SHMT2-219ENST00000555563 A0A1W2PPC4 97 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 ARHGAP42A6NI28 874 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 TMEM110-MUSTN1A8MSY1 372 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 J3KR12 359 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 DFFAO00273 331 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 ARHGAP33O14559 1287 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 PRAMEF11O60813 436 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 GKP32189 559 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 PAPOLAP51003 745 aaKnown RBP13.95□□□□□ -0.18
SHMT2-219ENST00000555563 CCR5P51681 352 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 ATXN3P54252 364 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-219ENST00000555563 TAS2R38P59533 333 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 TAS2R40P59535 323 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 RHOAP61586 193 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 SNRPD1P62314 119 aaKnown RBP13.95□□□□□ -0.18
SHMT2-219ENST00000555563 KRT81Q14533 505 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 HADHQ16836 314 aaKnown RBP13.95□□□□□ -0.18
SHMT2-219ENST00000555563 LAYNQ6UX15 382 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 PLPP6Q8IY26 295 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 RYBPQ8N488 228 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-219ENST00000555563 CASKIN2Q8WXE0 1202 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 TSC1Q92574 1164 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 VOPP1Q96AW1 172 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 PPP1R16AQ96I34 528 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 GDAP1L1Q96MZ0 367 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 SLC6A18Q96N87 628 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 EBF2Q9HAK2 575 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 TM9SF3Q9HD45 589 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 DYRK4Q9NR20 520 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 ETNK2Q9NVF9 386 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 KLHL11Q9NVR0 708 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 HECAQ9UBI9 543 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-219ENST00000555563 LHX3Q9UBR4 397 aa13.95□□□□□ -0.18
SHMT2-219ENST00000555563 UBA2Q9UBT2 640 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-219ENST00000555563 TBC1D3DA0A087WVF3 549 aa13.94□□□□□ -0.18
SHMT2-219ENST00000555563 TBC1D3IA0A087WXS9 549 aa13.94□□□□□ -0.18
SHMT2-219ENST00000555563 TBC1D3EA0A087X179 549 aa13.94□□□□□ -0.18
SHMT2-219ENST00000555563 TBC1D3KA0A087X1G2 549 aa13.94□□□□□ -0.18
SHMT2-219ENST00000555563 TBC1D3FA6NER0 549 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-219ENST00000555563 TBC1D3LB9A6J9 549 aa13.94□□□□□ -0.18
SHMT2-219ENST00000555563 KRIT1O00522 736 aa13.94□□□□□ -0.18
SHMT2-219ENST00000555563 TM4SF5O14894 197 aa13.94□□□□□ -0.18
SHMT2-219ENST00000555563 LATO43561 262 aa13.94□□□□□ -0.18
SHMT2-219ENST00000555563 SYPP08247 313 aa13.94□□□□□ -0.18
SHMT2-219ENST00000555563 TBC1D3HP0C7X1 549 aa13.94□□□□□ -0.18
SHMT2-219ENST00000555563 AMPD1P23109 780 aa13.94□□□□□ -0.18
SHMT2-219ENST00000555563 ITGB7P26010 798 aa13.94□□□□□ -0.18
SHMT2-219ENST00000555563 MAN1A1P33908 653 aa13.94□□□□□ -0.18
SHMT2-219ENST00000555563 AFF3P51826 1226 aaKnown RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms