RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	CWF19L1	Q69YN2	538 aa	Known RBP	10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	PKN3	Q6P5Z2	889 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	KLHL7	Q8IXQ5	586 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	STK40	Q8N2I9	435 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	PGBD3	Q8N328	593 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	SPEM1	Q8N4L4	309 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	CCDC89	Q8N998	374 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	TSEN2	Q8NCE0	465 aa	Known RBP	10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	OR6K2	Q8NGY2	324 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	MAML1	Q92585	1016 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	FATE1	Q969F0	183 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	NKD2	Q969F2	451 aa	Predicted RBP	10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	ISG20	Q96AZ6	181 aa	Known RBP	10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	CLDN23	Q96B33	292 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	EXOC2	Q96KP1	924 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	GDAP1L1	Q96MZ0	367 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	TMEM121	Q9BTD3	319 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	TUBB2B	Q9BVA1	445 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	CHRD	Q9H2X0	955 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	POLM	Q9NP87	494 aa	Predicted RBP	10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	SCUBE2	Q9NQ36	999 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	PRSS16	Q9NQE7	514 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	POLR3B	Q9NW08	1133 aa	Predicted RBP	10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	SPATA6	Q9NWH7	488 aa	Predicted RBP	10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	HECA	Q9UBI9	543 aa	Predicted RBP	10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	MMP17	Q9ULZ9	603 aa		10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	DRG1	Q9Y295	367 aa	Known RBP	10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	HELZ	P42694	1942 aa	Known RBP	10.32	□□□□□ -0.76
CPSF7-221	ENST00000543545	FAM86C2P	A6NEL3	165 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	CHURC1-FNTB	B4DL54	471 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545		F5H423	210 aa	Predicted RBP	10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	PDE2A	O00408	941 aa	Predicted RBP	10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	ADAM23	O75077	832 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	PHF2	O75151	1096 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	POP4	O95707	220 aa	Known RBP	10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	GSR	P00390	522 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	PTPN3	P26045	913 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	COIL	P38432	576 aa	Predicted RBP	10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	RPS9	P46781	194 aa	Known RBP	10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	CXCL12	P48061	93 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	LMNB2	Q03252	620 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	ZBTB17	Q13105	803 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	MTAP	Q13126	283 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	GAS6	Q14393	721 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	WHAMMP3	Q1A5X7	153 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	MYLK3	Q32MK0	819 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	TEX44	Q53QW1	395 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	C9orf64	Q5T6V5	341 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	ITPRIPL1	Q6GPH6	555 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	KIAA1211L	Q6NV74	962 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	CCDC137	Q6PK04	289 aa	Known RBP	10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	DPY19L3	Q6ZPD9	716 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	ARHGEF18	Q6ZSZ5	1173 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	SYT13	Q7L8C5	426 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	DSG4	Q86SJ6	1040 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	SRL	Q86TD4	932 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	TEX26	Q8N6G2	289 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	TSTD1	Q8NFU3	115 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	OR2AP1	Q8NGE2	309 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	OR2A12	Q8NGT7	310 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	OR2T3	Q8NH03	318 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	ATL2	Q8NHH9	583 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	GANC	Q8TET4	914 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	FRS2	Q8WU20	508 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	OR8D1	Q8WZ84	308 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	PTPRN2	Q92932	1015 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	MYO19	Q96H55	970 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	PSKH2	Q96QS6	385 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	VAT1	Q99536	393 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	IL12RB2	Q99665	862 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	GABRG3	Q99928	467 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	SEMA3C	Q99985	751 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	HEPH	Q9BQS7	1158 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	POLR1E	Q9GZS1	481 aa	Known RBP	10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	ZDHHC6	Q9H6R6	413 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	BCCIP	Q9P287	314 aa	Known RBP eCLIP	10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	LHX3	Q9UBR4	397 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	RSPH14	Q9UHP6	348 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	FEZ2	Q9UHY8	353 aa	Predicted RBP	10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	EVL	Q9UI08	416 aa	Predicted RBP	10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	TRHDE	Q9UKU6	1024 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	TTC28	Q96AY4	2481 aa		10.31	□□□□□ -0.76
CPSF7-221	ENST00000543545	MYOF	Q9NZM1	2061 aa		10.3	□□□□□ -0.76
CPSF7-221	ENST00000543545	TCRBV21S2A2	A0A5A6	115 aa		10.3	□□□□□ -0.76
CPSF7-221	ENST00000543545	TTC24	A2A3L6	582 aa	Predicted RBP	10.3	□□□□□ -0.76
CPSF7-221	ENST00000543545	MUSK	O15146	869 aa		10.3	□□□□□ -0.76
CPSF7-221	ENST00000543545	ZNF821	O75541	412 aa	Predicted RBP	10.3	□□□□□ -0.76
CPSF7-221	ENST00000543545	ALDH1A2	O94788	518 aa		10.3	□□□□□ -0.76
CPSF7-221	ENST00000543545	IL1B	P01584	269 aa		10.3	□□□□□ -0.76
CPSF7-221	ENST00000543545	HLA-DQB2	P05538	268 aa		10.3	□□□□□ -0.76
CPSF7-221	ENST00000543545	ITGAV	P06756	1048 aa		10.3	□□□□□ -0.76
CPSF7-221	ENST00000543545	CES1	P23141	567 aa		10.3	□□□□□ -0.76
CPSF7-221	ENST00000543545	GK	P32189	559 aa		10.3	□□□□□ -0.76
CPSF7-221	ENST00000543545	CHRNA3	P32297	505 aa		10.3	□□□□□ -0.76
CPSF7-221	ENST00000543545	CCNH	P51946	323 aa	Predicted RBP	10.3	□□□□□ -0.76
CPSF7-221	ENST00000543545	DGKE	P52429	567 aa		10.3	□□□□□ -0.76
CPSF7-221	ENST00000543545	NRL	P54845	237 aa		10.3	□□□□□ -0.76
CPSF7-221	ENST00000543545	DSC2	Q02487	901 aa		10.3	□□□□□ -0.76
CPSF7-221	ENST00000543545	NSUN2	Q08J23	767 aa	Known RBP eCLIP	10.3	□□□□□ -0.76
CPSF7-221	ENST00000543545	WASHC5	Q12768	1159 aa		10.3	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms