RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 C10orf142B7Z368 130 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 CD48P09326 243 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 AMPD1P23109 780 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 IL4RP24394 825 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 SERPINB6P35237 376 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 ADPRHP54922 357 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 SNRPD1P62314 119 aaKnown RBP15.3■□□□□ 0.04
CPSF1-208ENST00000532560 SF3A2Q15428 464 aaKnown RBP15.3■□□□□ 0.04
CPSF1-208ENST00000532560 ATP13A4Q4VNC1 1196 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 LRRC38Q5VT99 294 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 DCAF12L1Q5VU92 463 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 RAD9BQ6WBX8 426 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 LEKR1Q6ZMV7 388 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 MAP7D3Q8IWC1 876 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 C12orf50Q8NA57 414 aaPredicted RBP15.3■□□□□ 0.04
CPSF1-208ENST00000532560 OR2AP1Q8NGE2 309 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 GRIN3AQ8TCU5 1115 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 PPP1R16AQ96I34 528 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 HEPHQ9BQS7 1158 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 TM6SF2Q9BZW4 377 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 SMOC1Q9H4F8 434 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 C6orf106Q9H6K1 298 aaPredicted RBP15.3■□□□□ 0.04
CPSF1-208ENST00000532560 TMEM74BQ9NUR3 256 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 ETNK2Q9NVF9 386 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 UBA2Q9UBT2 640 aaPredicted RBP15.3■□□□□ 0.04
CPSF1-208ENST00000532560 ZBTB32Q9Y2Y4 487 aaPredicted RBP15.3■□□□□ 0.04
CPSF1-208ENST00000532560 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.3■□□□□ 0.04
CPSF1-208ENST00000532560 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.3■□□□□ 0.04
CPSF1-208ENST00000532560 WASF2Q9Y6W5 498 aa15.3■□□□□ 0.04
CPSF1-208ENST00000532560 LRRC72A6NJI9 287 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 PRR5-ARHGAP8B1AHC4 643 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 J3KR12 359 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 DFFAO00273 331 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 KPNA3O00505 521 aaPredicted RBP15.29■□□□□ 0.04
CPSF1-208ENST00000532560 LEFTY1O75610 366 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 DNA2P51530 1060 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 ARHGAP8P85298 464 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 CNTN1Q12860 1018 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 MMRN1Q13201 1228 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 POM121L1PQ3SYA9 428 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 AGBL4Q5VU57 503 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 TCEAL6Q6IPX3 200 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 SLC23A3Q6PIS1 610 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 VSIG1Q86XK7 387 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 KCTD6Q8NC69 237 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 OR2T34Q8NGX1 318 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 CEP76Q8TAP6 659 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 TCEAL3Q969E4 200 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 FAF2Q96CS3 445 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 LRIG1Q96JA1 1093 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 GDAP1L1Q96MZ0 367 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 CALN1Q9BXU9 219 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 KDM4CQ9H3R0 1056 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 SP110Q9HB58 689 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 KLHL11Q9NVR0 708 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 HECAQ9UBI9 543 aaPredicted RBP15.29■□□□□ 0.04
CPSF1-208ENST00000532560 LHX3Q9UBR4 397 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 SUSD2Q9UGT4 822 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 TPX2Q9ULW0 747 aaKnown RBP15.29■□□□□ 0.04
CPSF1-208ENST00000532560 REXO2Q9Y3B8 237 aaKnown RBP15.29■□□□□ 0.04
CPSF1-208ENST00000532560 MFHAS1Q9Y4C4 1052 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 WDR87Q6ZQQ6 2873 aa15.29■□□□□ 0.04
CPSF1-208ENST00000532560 ZNF487B1APH4 448 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 PATE3B3GLJ2 98 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 PLK4O00444 970 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 KHNYNO15037 678 aaKnown RBP15.28■□□□□ 0.04
CPSF1-208ENST00000532560 PLRG1O43660 514 aaKnown RBP15.28■□□□□ 0.04
CPSF1-208ENST00000532560 BUB1BO60566 1050 aaPredicted RBP15.28■□□□□ 0.04
CPSF1-208ENST00000532560 POP4O95707 220 aaKnown RBP15.28■□□□□ 0.04
CPSF1-208ENST00000532560 IGSF6O95976 241 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 COMTP21964 271 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 ITGB7P26010 798 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 NOP2P46087 812 aaKnown RBP15.28■□□□□ 0.04
CPSF1-208ENST00000532560 GSDMDP57764 484 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 RHOAP61586 193 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 IL10RBQ08334 325 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 CCDC15Q0P6D6 951 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 DUOXA1Q1HG43 343 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 AASDHQ4L235 1098 aaPredicted RBP15.28■□□□□ 0.04
CPSF1-208ENST00000532560 ANKRD20A8PQ5CZ79 823 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 TRIM61Q5EBN2 209 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 ARSIQ5FYB1 569 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 PIP5KL1Q5T9C9 394 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 KIAA0895LQ68EN5 471 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 C11orf63Q6NUN7 778 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 NCEH1Q6PIU2 408 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.28■□□□□ 0.04
CPSF1-208ENST00000532560 TP53INP2Q8IXH6 220 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 RGL4Q8IZJ4 473 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 OR14C36Q8NHC7 312 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 VOPP1Q96AW1 172 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 ARRDC3Q96B67 414 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 CALR3Q96L12 384 aaKnown RBP15.28■□□□□ 0.04
CPSF1-208ENST00000532560 ZNF599Q96NL3 588 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 OSBPL1AQ9BXW6 950 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 HDAC8Q9BY41 377 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 ZDHHC6Q9H6R6 413 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 DYRK4Q9NR20 520 aa15.28■□□□□ 0.04
CPSF1-208ENST00000532560 IPO11Q9UI26 975 aaKnown RBP15.28■□□□□ 0.04
CPSF1-208ENST00000532560 TFR2Q9UP52 801 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms