RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 LINC00696Q6ZRV3 163 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 Q6ZVL8 140 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PLEKHM3Q6ZWE6 761 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 USP49Q70CQ1 688 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 H1FNTQ75WM6 255 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ERN2Q76MJ5 926 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CHST9Q7L1S5 443 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RRAGAQ7L523 313 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OTUD6AQ7L8S5 288 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF627Q7L945 461 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GSTA5Q7RTV2 222 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 NUP54Q7Z3B4 507 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MIER3Q7Z3K6 550 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 UBE3BQ7Z3V4 1068 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PIWIL3Q7Z3Z3 882 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SZRD1Q7Z422 152 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPP1R42Q7Z4L9 355 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DNAJB7Q7Z6W7 309 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 NEK8Q86SG6 692 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADGRG6Q86SQ4 1221 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADCK1Q86TW2 530 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MON1AQ86VX9 555 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DNAAF5Q86Y56 855 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM90A1Q86YD7 464 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RHPN2Q8IUC4 686 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TICAM1Q8IUC6 712 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZDHHC17Q8IUH5 632 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 EGFL6Q8IUX8 553 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 VRK3Q8IV63 474 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CEP97Q8IW35 865 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC28AQ8IWP9 274 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 UEVLDQ8IX04 471 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TUSC5Q8IXB3 177 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RBM12BQ8IXT5 1001 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SCML4Q8N228 414 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PQLC1Q8N2U9 271 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 C17orf53Q8N3J3 647 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MPP5Q8N3R9 675 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GALNT4Q8N4A0 578 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 HDDC3Q8N4P3 179 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 WDTC1Q8N5D0 677 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC15A4Q8N697 577 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 NANOGP1Q8N7R0 232 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DNAJC5GQ8N7S2 189 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FRMD1Q8N878 549 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANKRD44Q8N8A2 993 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PTGR2Q8N8N7 351 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RTL3Q8N8U3 475 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DCBLD1Q8N8Z6 715 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MRPL43Q8N983 215 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 NAT8LQ8N9F0 302 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GOLGA6L2Q8N9W4 650 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FSIP1Q8NA03 581 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 POC5Q8NA72 575 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZBTB44Q8NCP5 570 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF540Q8NDQ6 660 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CNNM3Q8NE01 707 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GMCL1P1Q8NEA9 526 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MNS1Q8NEH6 495 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 REPS2Q8NFH8 660 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 IL17RDQ8NFM7 739 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ABHD11Q8NFV4 315 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TNIP2Q8NFZ5 429 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OR56A1Q8NGH5 318 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OR52K2Q8NGK3 314 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OR1N1Q8NGS0 311 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OR2I1PQ8NGU4 316 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OR56A3Q8NH54 315 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 KIF18AQ8NI77 898 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PSMA8Q8TAA3 256 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SCAMP5Q8TAC9 235 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SPATA20Q8TB22 786 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 IFI44Q8TCB0 444 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 METTL6Q8TCB7 284 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 BICD2Q8TD16 824 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 NEK9Q8TD19 979 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 BRSK1Q8TDC3 778 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CSGALNACT1Q8TDX6 532 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ABHD5Q8WTS1 349 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM216AQ8WUB2 273 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GIMAP1Q8WWP7 306 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRPF31Q8WWY3 499 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 STON2Q8WXE9 905 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CTNNBL1Q8WYA6 563 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRT35Q92764 455 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 STAMQ92783 540 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 HOXB13Q92826 284 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TNPO1Q92973 898 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARHGEF2Q92974 986 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PTP4A1Q93096 173 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 NKD2Q969F2 451 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SMARCE1Q969G3 411 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SYAP1Q96A49 352 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 VPS33AQ96AX1 596 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC22A18Q96BI1 424 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM149B1Q96BN6 582 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OTULINQ96BN8 352 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GRAMD1AQ96CP6 724 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RMDN1Q96DB5 314 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 KTI12Q96EK9 354 aaPredicted RBP0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms