RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 FGF19O95750 216 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 CHRNB1P11230 501 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 HLA-FP30511 346 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 CCR1P32246 355 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 OPRD1P41143 372 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 PSMD8P48556 350 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 ETF1P62495 437 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 ZNF177Q13360 481 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 RNF220Q5VTB9 566 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 NUDT18Q6ZVK8 323 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 CCDC25Q86WR0 208 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 TMPRSS6Q8IU80 811 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 GALNT15Q8N3T1 639 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 PDCD7Q8N8D1 485 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 MDGA1Q8NFP4 955 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 IGSF8Q969P0 613 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 NMD3Q96D46 503 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 MRRFQ96E11 262 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 MYRFLQ96LU7 910 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 COQ7Q99807 217 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 GPR174Q9BXC1 333 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 ADAM33Q9BZ11 813 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 THAP2Q9H0W7 228 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 TBC1D14Q9P2M4 693 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 LIMA1Q9UHB6 759 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 PCDHGA3Q9Y5H0 932 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 ATG2AQ2TAZ0 1938 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 A0A0U1RQS6 177 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 LUC7L3O95232 432 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 LCA5LO95447 670 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 FYNP06241 537 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 TCF4P15884 667 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 CSKP41240 450 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 CCR3P51677 355 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 IL9RQ01113 521 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 CDR2Q01850 454 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 POU5F1Q01860 360 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 TCF15Q12870 199 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 EFHC1Q5JVL4 640 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 ARHGAP17Q68EM7 881 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 FBXL22Q6P050 247 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 Q6ZVU0 165 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 CPLX4Q7Z7G2 160 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 CCDC185Q8N715 623 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 TERB1Q8NA31 727 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 KLF16Q9BXK1 252 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 PCMTD2Q9NV79 361 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 TUBA8Q9NY65 449 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 SH3GLB1Q9Y371 365 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 RALGAPA2Q2PPJ7 1873 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 TDRD6O60522 2096 aaKnown RBP8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 A0A1W2PQ67 120 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 TTC34A8MYJ7 566 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 SLC31A1O15431 190 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 ETS2P15036 469 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 CHRNB2P17787 502 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 ADCY8P40145 1251 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 GUCY2DQ02846 1103 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 FCHO2Q0JRZ9 810 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 WASHC5Q12768 1159 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 MRPL28Q13084 256 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 NFIL3Q16649 462 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 ZNF542PQ5EBM4 170 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 ALKBH5Q6P6C2 394 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 ENOSF1Q7L5Y1 443 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 TTC39CQ8N584 583 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 SCG3Q8WXD2 468 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 GLMNQ92990 594 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 SERPINB11Q96P15 392 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 NAP1L3Q99457 506 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 OCEL1Q9H607 264 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 SYNDIG1Q9H7V2 258 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 ANLNQ9NQW6 1124 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 CA5BQ9Y2D0 317 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 FCF1Q9Y324 198 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 FAM72CH0Y354 149 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 TMCC2O75069 709 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 NDUFS2O75306 463 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 PCDH8O95206 1070 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 RHOCP08134 193 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 TACR2P21452 398 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 ALDH3A1P30838 453 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 NNMTP40261 264 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 IL12RB1P42701 662 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 ZNF132P52740 706 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 METAP1P53582 386 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 EPHA5P54756 1037 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 NOMO3P69849 1222 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 AUHQ13825 339 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 ADGRF1Q5T601 910 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 FAM72AQ5TYM5 149 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 MBLAC2Q68D91 279 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 FAM72DQ6L9T8 149 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 RD3Q7Z3Z2 195 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 RALGPS2Q86X27 583 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 FAM72BQ86X60 149 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 DDX42Q86XP3 938 aaKnown RBP eCLIP8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 CCNYQ8ND76 341 aa8.04□□□□□ -1.12
LIMCH1-219ENST00000514096 OR14C36Q8NHC7 312 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms