RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 TAPT1Q6NXT6 567 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 TMEM26Q6ZUK4 368 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 NAT16Q8N8M0 369 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 GABPB2Q8TAK5 448 aaPredicted RBP9.78□□□□□ -0.84
VCAN-210ENST00000513960 SORT1Q99523 831 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 LGMNQ99538 433 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 SGIP1Q9BQI5 828 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 GATA5Q9BWX5 397 aaPredicted RBP9.78□□□□□ -0.84
VCAN-210ENST00000513960 ADNPQ9H2P0 1102 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 SYBUQ9NX95 663 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.78□□□□□ -0.84
VCAN-210ENST00000513960 RBM47A0AV96 593 aaKnown RBP9.78□□□□□ -0.84
VCAN-210ENST00000513960 SH3PXD2BA1X283 911 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 K7EPI3 171 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 TPD52L2O43399 206 aaKnown RBP9.78□□□□□ -0.84
VCAN-210ENST00000513960 FBXO21O94952 628 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 PRKCHP24723 683 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 SPRP35270 261 aaPredicted RBP9.78□□□□□ -0.84
VCAN-210ENST00000513960 GNL1P36915 607 aaPredicted RBP9.78□□□□□ -0.84
VCAN-210ENST00000513960 GRIA4P48058 902 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 TUBB3Q13509 450 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 MAPK11Q15759 364 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 TMEM53Q6P2H8 277 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 TTC30AQ86WT1 665 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 MTG1Q9BT17 334 aaPredicted RBP9.78□□□□□ -0.84
VCAN-210ENST00000513960 MAGEB5Q9BZ81 275 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 STN1Q9H668 368 aaKnown RBP9.78□□□□□ -0.84
VCAN-210ENST00000513960 CXorf21Q9HAI6 301 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 TUBGCP4Q9UGJ1 667 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 EMCNQ9ULC0 261 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 A0A087WXM4 84 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 TMEM233B4DJY2 109 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 GMNNO75496 209 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 IL1BP01584 269 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 MT-ND1P03886 318 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 POLBP06746 335 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 FAM163BP0C2L3 166 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 ZNF23P17027 643 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 ACAT1P24752 427 aaKnown RBP9.78□□□□□ -0.84
VCAN-210ENST00000513960 ADORA2BP29275 332 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 PPARGP37231 505 aaPredicted RBP9.78□□□□□ -0.84
VCAN-210ENST00000513960 ARL4AP40617 200 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 GJA8P48165 433 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 EMP3P54852 163 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 PLCL1Q15111 1095 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 PCDH19Q8TAB3 1148 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 GTF3C2Q8WUA4 911 aaPredicted RBP9.78□□□□□ -0.84
VCAN-210ENST00000513960 LPGAT1Q92604 370 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 SLC39A3Q9BRY0 314 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 B3GNT5Q9BYG0 378 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 ING2Q9H160 280 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 PLEKHA5Q9HAU0 1116 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 NMRAL1Q9HBL8 299 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 IARS2Q9NSE4 1012 aaKnown RBP9.78□□□□□ -0.84
VCAN-210ENST00000513960 UBP1Q9NZI7 540 aa9.78□□□□□ -0.84
VCAN-210ENST00000513960 A0A0G2JMZ2 1700 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 HMX2A2RU54 273 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 C9JVG2 144 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 KCNK1O00180 336 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 PLOD2O00469 737 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 DPYSL4O14531 572 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 SPTLC1O15269 473 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 NFKBIAP25963 317 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 GP5P40197 560 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 ATXN1P54253 815 aaKnown RBP9.77□□□□□ -0.84
VCAN-210ENST00000513960 SLC12A2P55011 1212 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 DMPKQ09013 629 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 BFSP2Q13515 415 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 TBCELQ5QJ74 424 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 NAPRTQ6XQN6 538 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 SETD3Q86TU7 594 aaPredicted RBP9.77□□□□□ -0.84
VCAN-210ENST00000513960 ZDHHC17Q8IUH5 632 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 LINC01465Q8N7H1 131 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 ISOC1Q96CN7 298 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 SIGLEC10Q96LC7 697 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 SLC29A1Q99808 456 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 ZNF670Q9BS34 389 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 C16orf70Q9BSU1 422 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 OSBPL11Q9BXB4 747 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 CCDC90BQ9GZT6 254 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 PIF1Q9H611 641 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 EGFL7Q9UHF1 273 aa9.77□□□□□ -0.84
VCAN-210ENST00000513960 RUVBL2Q9Y230 463 aaKnown RBP9.77□□□□□ -0.84
VCAN-210ENST00000513960 BCLAF3A2AJT9 711 aaKnown RBP9.77□□□□□ -0.85
VCAN-210ENST00000513960 HEATR9A2RTY3 570 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 C7orf72A4D263 438 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 FAM159BA6NKW6 160 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 CFAP99D6REC4 459 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 PAPSS1O43252 624 aaPredicted RBP9.77□□□□□ -0.85
VCAN-210ENST00000513960 PFKMP08237 780 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 LCP1P13796 627 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 ARRB2P32121 409 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 RPL14P50914 215 aaKnown RBP9.77□□□□□ -0.85
VCAN-210ENST00000513960 PLK1P53350 603 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 TSPY1Q01534 308 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 ARL13AQ5H913 290 aaPredicted RBP9.77□□□□□ -0.85
VCAN-210ENST00000513960 SLC27A1Q6PCB7 646 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 C4orf22Q6V702 233 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 CYP4V2Q6ZWL3 525 aaPredicted RBP9.77□□□□□ -0.85
VCAN-210ENST00000513960 KDELC2Q7Z4H8 507 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms