RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 LINC01553A4QN01 128 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 EYA2O00167 538 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 LINC01565O15544 149 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 PRC1O43663 620 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 ITM2AO43736 263 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 SKAP2O75563 359 aaPredicted RBP3.26□□□□□ -1.89
CPSF3-205ENST00000489629 MMP3P08254 477 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 CYP4B1P13584 511 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 DPP6P42658 865 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 RPS6KA3P51812 740 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 TBX4P57082 545 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 ADORA2A-AS1P86434 159 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 EFHC1Q5JVL4 640 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 PGBD2Q6P3X8 592 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 KLHL17Q6TDP4 642 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 BRSK2Q8IWQ3 736 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 LILRB1Q8NHL6 650 aaPredicted RBP3.26□□□□□ -1.89
CPSF3-205ENST00000489629 GPT2Q8TD30 523 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 TMEM18Q96B42 140 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 HERC2P3Q9BVR0 1158 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 RETREG1Q9H6L5 497 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 ACAD9Q9H845 621 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 CLK4Q9HAZ1 481 aaKnown RBP3.26□□□□□ -1.89
CPSF3-205ENST00000489629 TMLHEQ9NVH6 421 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 THAP1Q9NVV9 213 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 GRHL1Q9NZI5 618 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 LRFN1Q9P244 771 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 ERRFI1Q9UJM3 462 aaPredicted RBP3.26□□□□□ -1.89
CPSF3-205ENST00000489629 BAG5Q9UL15 447 aa3.26□□□□□ -1.89
CPSF3-205ENST00000489629 A0A0U1RQJ8 604 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 ACKR2O00590 384 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 SYN3O14994 580 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 CCNT1O60563 726 aaKnown RBP3.25□□□□□ -1.89
CPSF3-205ENST00000489629 SERPINI2O75830 405 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 UMODP07911 640 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 F7P08709 466 aaPredicted RBP3.25□□□□□ -1.89
CPSF3-205ENST00000489629 DAOP14920 347 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 RFC1P35251 1148 aaPredicted RBP3.25□□□□□ -1.89
CPSF3-205ENST00000489629 MXI1P50539 228 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 MVDP53602 400 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 SLC39A14Q15043 492 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 PUM3Q15397 648 aaKnown RBP3.25□□□□□ -1.89
CPSF3-205ENST00000489629 TANGO2Q6ICL3 276 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 SULT6B1Q6IMI4 303 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 CCSAPQ6IQ19 270 aaPredicted RBP3.25□□□□□ -1.89
CPSF3-205ENST00000489629 TOGARAM2Q6ZUX3 1019 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 RASGRP2Q7LDG7 609 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 PATL1Q86TB9 770 aaKnown RBP3.25□□□□□ -1.89
CPSF3-205ENST00000489629 TMC8Q8IU68 726 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 CCDC117Q8IWD4 279 aaPredicted RBP3.25□□□□□ -1.89
CPSF3-205ENST00000489629 ATG16L2Q8NAA4 619 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 ZNF114Q8NC26 417 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 OR4N2Q8NGD1 307 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 SVIPQ8NHG7 77 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 OTUD7AQ8TE49 926 aaPredicted RBP3.25□□□□□ -1.89
CPSF3-205ENST00000489629 C3orf49Q96BT1 292 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 IGSF21Q96ID5 467 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 NPFFR1Q9GZQ6 430 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 LHPPQ9H008 270 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 KCND3Q9UK17 655 aa3.25□□□□□ -1.89
CPSF3-205ENST00000489629 A0A0B4J293 547 aa3.24□□□□□ -1.89
CPSF3-205ENST00000489629 A0A1B0GVM2 712 aa3.24□□□□□ -1.89
CPSF3-205ENST00000489629 DYTNA2CJ06 578 aa3.24□□□□□ -1.89
CPSF3-205ENST00000489629 NTN3O00634 580 aaPredicted RBP3.24□□□□□ -1.89
CPSF3-205ENST00000489629 TCEA1P23193 301 aaKnown RBP3.24□□□□□ -1.89
CPSF3-205ENST00000489629 C21orf33P30042 268 aaPredicted RBP3.24□□□□□ -1.89
CPSF3-205ENST00000489629 DCTDP32321 178 aa3.24□□□□□ -1.89
CPSF3-205ENST00000489629 MTNR1AP48039 350 aa3.24□□□□□ -1.89
CPSF3-205ENST00000489629 TNFAIP2Q03169 654 aa3.24□□□□□ -1.89
CPSF3-205ENST00000489629 PDCLQ13371 301 aa3.24□□□□□ -1.89
CPSF3-205ENST00000489629 SMAD1Q15797 465 aaKnown RBP3.24□□□□□ -1.89
CPSF3-205ENST00000489629 HSP90AB2PQ58FF8 381 aa3.24□□□□□ -1.89
CPSF3-205ENST00000489629 MEX3BQ6ZN04 569 aaKnown RBP3.24□□□□□ -1.89
CPSF3-205ENST00000489629 ZNF771Q7L3S4 317 aaPredicted RBP3.24□□□□□ -1.89
CPSF3-205ENST00000489629 RRAGAQ7L523 313 aa3.24□□□□□ -1.89
CPSF3-205ENST00000489629 HES6Q96HZ4 224 aa3.24□□□□□ -1.89
CPSF3-205ENST00000489629 CCDC136Q96JN2 1154 aa3.24□□□□□ -1.89
CPSF3-205ENST00000489629 INPP4AQ96PE3 977 aaPredicted RBP3.24□□□□□ -1.89
CPSF3-205ENST00000489629 TRAPPC9Q96Q05 1148 aa3.24□□□□□ -1.89
CPSF3-205ENST00000489629 RMDN3Q96TC7 470 aa3.24□□□□□ -1.89
CPSF3-205ENST00000489629 CXorf56Q9H5V9 222 aa3.24□□□□□ -1.89
CPSF3-205ENST00000489629 MVB12BQ9H7P6 319 aa3.24□□□□□ -1.89
CPSF3-205ENST00000489629 PLEKHA2Q9HB19 425 aa3.24□□□□□ -1.89
CPSF3-205ENST00000489629 FBXO40Q9UH90 709 aa3.24□□□□□ -1.89
CPSF3-205ENST00000489629 IGLV5-37A0A075B6J1 123 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 FAM157AC9JC47 383 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 H0Y3Z8 333 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 BMPR1BO00238 502 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 BUB3O43684 328 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 KIF1CO43896 1103 aaKnown RBP3.23□□□□□ -1.89
CPSF3-205ENST00000489629 IGLV2-11P01706 119 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 TFRCP02786 760 aaKnown RBP3.23□□□□□ -1.89
CPSF3-205ENST00000489629 CSF1P09603 554 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 SETSIPP0DME0 302 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 CKMT1AP12532 417 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 GJC1P36383 396 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 PNPLA4P41247 253 aa3.23□□□□□ -1.89
CPSF3-205ENST00000489629 SKIV2L2P42285 1042 aaKnown RBP3.23□□□□□ -1.89
CPSF3-205ENST00000489629 THOC5Q13769 683 aaKnown RBP3.23□□□□□ -1.89
CPSF3-205ENST00000489629 SF3B4Q15427 424 aaKnown RBP eCLIP3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms